Browse Element(s) Details


OsAffx.27931.1.S1_at

Description tigr:9634.m04704
TID=OsAffx.27931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48140NANA6+29120168..29123346hypothetical protein
LOC_Os06g48150NANA6+29125049..29125381hypothetical protein
LOC_Os06g48160Os.28030.1.S1_at11/116+29132108..29133573xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160Os.28030.1.S1_s_at11/116+29132108..29133573xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48160Os.28030.2.A1_at11/116+29132108..29133573xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48170OsAffx.15981.1.S1_at11/116+29136090..29138508Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48180Os.27205.1.S1_at11/116+29143890..29145563Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os06g48190OsAffx.27931.1.S1_at11/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.5700.1.S1_x_at1/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.27931.2.S1_x_at1/116+29146381..29147624expressed protein
LOC_Os06g48190OsAffx.27931.2.S1_at1/116+29146381..29147624expressed protein
LOC_Os06g48200Os.22839.1.S2_at11/116+29155430..29156885xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48200Os.22839.1.S1_at11/116+29155430..29156885xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os06g48210OsAffx.28166.1.S1_at11/116+29162810..29165835ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48210OsAffx.28166.1.S1_s_at11/116+29162810..29165835ATP-dependent helicase DDX41, putative, expressed
LOC_Os06g48220NANA6+29170336..29171172hypothetical protein
LOC_Os06g48230Os.52719.1.S1_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed
LOC_Os06g48230Os.8227.1.A1_s_at11/116+29172200..29174610RNA polymerase Rpb8 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27931.1.S1_at--788--3791Chr06:29146471..29146495 (25 bp)
CTCGCCGCCGATGATAAAGCAGGAG
LOC_Os06g48190
OsAffx.27931.1.S1_at--1091--2331Chr06:29146486..29146812 (25 bp)
AAAGCAGGAGGAGTTGGTCCACCGC
LOC_Os06g48190
OsAffx.27931.1.S1_at--937--9211Chr06:29146805..29146829 (25 bp)
TCCACCGCGGAAAAGAGGATGGGCC
LOC_Os06g48190
OsAffx.27931.1.S1_at--1123--6251Chr06:29146822..29146846 (25 bp)
GATGGGCCGTGTGTCCAGTTCCGCC
LOC_Os06g48190
OsAffx.27931.1.S1_at--419--7471Chr06:29146830..29146854 (25 bp)
GTGTGTCCAGTTCCGCCTTCCGAAC
LOC_Os06g48190
OsAffx.27931.1.S1_at--79--3651Chr06:29146846..29146870 (25 bp)
CTTCCGAACTCCAAAGCCTTATATT
LOC_Os06g48190
OsAffx.27931.1.S1_at--501--4311Chr06:29146862..29146886 (25 bp)
CCTTATATTTGGCTGTGGGCTACAT
LOC_Os06g48190
OsAffx.27931.1.S1_at--629--231Chr06:29146866..29146890 (25 bp)
ATATTTGGCTGTGGGCTACATCGCT
LOC_Os06g48190
OsAffx.27931.1.S1_at--416--7591Chr06:29146878..29146902 (25 bp)
GGGCTACATCGCTCTGTGATGGACA
LOC_Os06g48190
OsAffx.27931.1.S1_at--1036--9871Chr06:29146882..29146903 (22 bp)
TACATCGCTCTGTGATGGACAGCCG
LOC_Os06g48190
OsAffx.27931.1.S1_at--28--4811Chr06:29146888..29147209 (25 bp)
GCTCTGTGATGGACAGCCGGTCGAC
LOC_Os06g48190
Target Sequence 
CTCGCCGCCGATGATAAAGCAGGAGGAGTTGGTCCACCGCGGAAAAGAGGATGGGCCGTGTGTCCAGTTCCGCCTTCCGA
ACTCCAAAGCCTTATATTTGGCTGTGGGCTACATCGCTCTGTGATGGACAGCCGGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis