Browse Element(s) Details


Os.7404.1.S1_a_at

Description gb:AK102895.1
DB_XREF= gi:32988104
TID=Os.7404.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518F01.8 (P0518F01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112N23, full insert sequence.
FL= gb:AK102895.1 gb:AK067562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4164011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41600Os.18250.1.S1_at11/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.28171.1.S1_at4/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.24197.1.S1_x_at1/111+23878818..23881100expressed protein
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7404.1.S1_a_at--763--10431Chr01:23906779..23906803 (25 bp)
TTATGGCTGCTGCTCAGTCTATGAA
LOC_Os01g41640
Os.7404.1.S1_a_at--374--5291Chr01:23906900..23906924 (25 bp)
GAAGGATTACTTCTTGTCGGCAAAT
LOC_Os01g41640
Os.7404.1.S1_a_at--870--7851Chr01:23906948..23906972 (25 bp)
GGTAGAGAATCCACAGTCTGATGAT
LOC_Os01g41640
Os.7404.1.S1_a_at--739--5551Chr01:23907005..23907029 (25 bp)
GAAACCATCCGCTAATGCTTACTTG
LOC_Os01g41640
Os.7404.1.S1_a_at--575--3611Chr01:23907026..23907050 (25 bp)
CTTGGGAGAGTCTTTTGGCGAGTCT
LOC_Os01g41640
Os.7404.1.S1_a_at--828--6051Chr01:23907052..23907076 (25 bp)
GAGTTGGGACGATTGCTGTTGCTTC
LOC_Os01g41640
Os.7404.1.S1_a_at--80--1011Chr01:23907077..23907101 (25 bp)
AGGTTCCCCTTCTGTAGGATGTCAT
LOC_Os01g41640
Os.7404.1.S1_a_at--398--3531Chr01:23907099..23907123 (25 bp)
CATGCAGCTTCTGTCTGGATGATGA
LOC_Os01g41640
Os.7404.1.S1_a_at--332--9811Chr01:23907207..23907231 (25 bp)
TAACTTAGACTCGATGCATGATGCT
LOC_Os01g41640
Os.7404.1.S1_a_at--790--1331Chr01:23907312..23907336 (25 bp)
AGAGTACCTTTTATGTTATCCCACG
LOC_Os01g41640
Os.7404.1.S1_a_at--1102--10411Chr01:23907327..23907351 (25 bp)
TTATCCCACGGAACATCTTTTAAGT
LOC_Os01g41640
Target Sequence 
TTATGGCTGCTGCTCAGTCTATGAAGGCGATGGCTAATGGCATGAGGAAAAGGAAGGATTGCGGGGCTGAAGACGCAAAT
GTGGTCAAGTTTGTGAAGTACAAGGTTGAAGACAGCTCAGTGAAGGATTACTTCTTGTCGGCAAATAATGGTATGAGCAG
TGGTAGTGAGGTAGAGAATCCACAGTCTGATGATGAGATGGAAGAAACTGATTGATGGATAGAGAGGAAACCATCCGCTA
ATGCTTACTTGGGAGAGTCTTTTGGCGAGTCTGGAGTTGGGACGATTGCTGTTGCTTCAGGTTCCCCTTCTGTAGGATGT
CATGCAGCTTCTGTCTGGATGATGAATGAAGCGGGATTCTAGGATAATAATCTGCAACGCAGAGCCCGACCCCAGCCAGG
CTTACCGATATAGTAGTAACTGCTTAGCTAACTTAGACTCGATGCATGATGCTACAAACTATATATCATGTTCTCTTCTA
TATGCAATAGAGACTTNAAAATGTAGATCTACTTTAAAGACTTCTGTAAGAGAAGAGTACCTTTTATGTTATCCCACGGA
ACATCTTTTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7404.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis