Browse Element(s) Details


Os.36122.1.A1_at

Description gb:AK064442.1
DB_XREF= gi:32974460
TID=Os.36122.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518F01.10 (P0518F01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-E07, full insert sequence.
FL= gb:AK064442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g416509/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36122.1.A1_at--838--8252Chr01:23910815..23910928 (25 bp)
GGCAGTAACTCACACATATCAGGAT
LOC_Os01g41650
Os.36122.1.A1_at--1045--971Chr01:23910941..23910965 (25 bp)
AGGAGAGTTCCTTAGTCGAGGCATA
LOC_Os01g41650
Os.36122.1.A1_at--182--8231Chr01:23910978..23911002 (25 bp)
GGCAATATTGCCTGCCATTGTGAGT
LOC_Os01g41650
Os.36122.1.A1_at--990--8651Chr01:23911024..23911048 (25 bp)
TGTGGCACACGAAGAGCCTGTCCTA
LOC_Os01g41650
Os.36122.1.A1_at--967--5851Chr01:23911037..23911061 (25 bp)
GAGCCTGTCCTACTTCAGTGGATAC
LOC_Os01g41650
Os.36122.1.A1_at--905--1231Chr01:23911153..23911177 (25 bp)
AGTTCCTCGCCATTATTCCATGGAT
LOC_Os01g41650
Os.36122.1.A1_at--184--671Chr01:23911176..23911200 (25 bp)
ATGAACCTCGGCCTTGAGAAGCTGT
LOC_Os01g41650
Os.36122.1.A1_at--298--7871Chr01:23911229..23911253 (25 bp)
GGTATTTCTCCTTTGGCATGACATA
LOC_Os01g41650
Os.36122.1.A1_at--938--5211Chr01:23911314..23911338 (25 bp)
GAAATGCCTTTTACCATTGGCCGTC
LOC_Os01g41650
Os.36122.1.A1_at--257--751Chr01:23912758..23912782 (25 bp)
ATGTTTGCTCTCTGATTCTGTATCC
NONE
Os.36122.1.A1_at--825--6571Chr01:23912771..23912795 (25 bp)
GATTCTGTATCCCATGGTACCATTA
NONE
Target Sequence 
GGCAGTAACTCACACATATCAGGATAAATGCAGACTGAGGAGAGTTCCTTAGTCGAGGCATATGGAAATGGTAAGGCAAT
ATTGCCTGCCATTGTGAGTAAAGAATTGGTTACAGATTAATGTGGCACACGAAGAGCCTGTCCTACTTCAGTGGATACTG
GATTGCTCATATCACATTTATATTCAAATTGGGATGGTTGTGCAGGTGGGGTGATCAACTTGTTGACCAACTTAAGTAAG
GTCTGTTCGAGTTCCTCGCCATTATTCCATGGATGAACCTCGGCCTTGAGAAGCTGTTTGTTGCTGCTGATGAGATTCCA
GAGGGGGTATTTCTCCTTTGGCATGACATAGTCCCCTTCCCCTAGCTTAAGGGAGGGGCAATAATCTCCTCTGCCATCAC
CAATGTAGATGAAATGCCTTTTACCATTGGCCGTCTCCAGGCTGACTTGCCTGCCTCCCTCCTCCTTACACATGTTTGCT
CTCTGATTCTGTATCCCATGGTACCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36122.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis