Browse Element(s) Details


Os.36122.2.S1_at

Description gb:BX927920
DB_XREF= gi:41882439
DB_XREF=BX927920
CLONE=p771b04p5
TID=Os.36122.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518F01.10 (P0518F01.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4166011/11Phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36122.2.S1_at--198--4191Chr01:23911204..23911228 (25 bp)
CCCTCTGGAATCTCATCAGCAGCAA
LOC_Os01g41660
Os.36122.2.S1_at--680--9731Chr01:23911168..23911192 (25 bp)
TCAAGGCCGAGGTTCATCCATGGAA
LOC_Os01g41660
Os.36122.2.S1_at--910--8151Chr01:23911134..23911158 (25 bp)
GGAACTCGAACAGACCTTACTTAAG
LOC_Os01g41660
Os.36122.2.S1_at--576--6491Chr01:23911052..23911076 (25 bp)
GATATGAGCAATCCAGTATCCACTG
LOC_Os01g41660
Os.36122.2.S1_at--863--1171Chr01:23911026..23911050 (25 bp)
AGTAGGACAGGCTCTTCGTGTGCCA
LOC_Os01g41660
Os.36122.2.S1_at--143--7471Chr01:23911009..23911033 (25 bp)
GTGTGCCACATTAATCTGTAACCAA
LOC_Os01g41660
Os.36122.2.S1_at--654--9791Chr01:23910991..23911015 (25 bp)
TAACCAATTCTTTACTCACAATGGC
LOC_Os01g41660
Os.36122.2.S1_at--949--8211Chr01:23910965..23910989 (25 bp)
GGCAATATTGCCTTACCATTTCCAT
LOC_Os01g41660
Os.36122.2.S1_at--796--4311Chr01:23910950..23910974 (25 bp)
CCATTTCCATATGCCTCGACTAAGG
LOC_Os01g41660
Os.36122.2.S1_at--311--2931Chr01:23910929..23910953 (25 bp)
AAGGAACTCTCCTCAGTCTGCATTT
LOC_Os01g41660
Os.36122.2.S1_at--821--7171Chr01:23910914..23910938 (25 bp)
GTCTGCATTTATCCTGATATGTGCT
LOC_Os01g41660
Target Sequence 
CCCTCTGGAATCTCATCAGCAGCAACAAACAGCTTCTCAAGGCCGAGGTTCATCCATGGAATAATGGCGAGGAACTCGAA
CAGACCTTACTTAAGTTGGTCAACAAGTTGATCACCCCACCTGCACAACCATCCCAATTTGAATATAAATGTGATATGAG
CAATCCAGTATCCACTGAAGTAGGACAGGCTCTTCGTGTGCCACATTAATCTGTAACCAATTCTTTACTCACAATGGCAG
GCAATATTGCCTTACCATTTCCATATGCCTCGACTAAGGAACTCTCCTCAGTCTGCATTTATCCTGATATGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36122.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis