Browse Element(s) Details


Os.7941.2.S1_s_at

Description gb:AK119173.1
DB_XREF= gi:37988796
TID=Os.7941.2
CNT=425
FEA=FLmRNA
TIER=FL+Stack
STK=130
UG=Os.7941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chlorophyll ab-binding protein 2 (P0518F01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B06, full insert sequence.
FL= gb:AK061619.1 gb:AK119173.1 gb:AK121563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4171011/11Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0030076cellular_componentlight-harvesting complex
GO:0042651cellular_componentthylakoid membrane
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7941.2.S1_s_at--855--5791Chr01:23935094..23935118 (25 bp)
GACGCATCGCCTTCAGCTAAGCTAG
LOC_Os01g41710
Os.7941.2.S1_s_at--31--1851Chr01:23935095..23935119 (25 bp)
ACGCATCGCCTTCAGCTAAGCTAGC
LOC_Os01g41710
Os.7941.2.S1_s_at--419--4131Chr01:23935096..23935120 (25 bp)
CGCATCGCCTTCAGCTAAGCTAGCT
LOC_Os01g41710
Os.7941.2.S1_s_at--251--4971Chr01:23935097..23935121 (25 bp)
GCATCGCCTTCAGCTAAGCTAGCTA
LOC_Os01g41710
Os.7941.2.S1_s_at--109--1871Chr01:23935127..23935151 (25 bp)
ACGACGATGCGCGTCTCTGCAGGAG
LOC_Os01g41710
Os.7941.2.S1_s_at--823--4091Chr01:23935128..23935152 (25 bp)
CGACGATGCGCGTCTCTGCAGGAGA
LOC_Os01g41710
Os.7941.2.S1_s_at--109--1891Chr01:23935130..23935154 (25 bp)
ACGATGCGCGTCTCTGCAGGAGAGT
LOC_Os01g41710
Os.7941.2.S1_s_at--980--9151Chr01:23935134..23935158 (25 bp)
TGCGCGTCTCTGCAGGAGAGTGTGC
LOC_Os01g41710
Os.7941.2.S1_s_at--992--6251Chr01:23935180..23935204 (25 bp)
GATGTACGTACGTGTACCGTATAGA
LOC_Os01g41710
Os.7941.2.S1_s_at--809--731Chr01:23935181..23935205 (25 bp)
ATGTACGTACGTGTACCGTATAGAT
LOC_Os01g41710
Os.7941.2.S1_s_at--699--8711Chr01:23935182..23935206 (25 bp)
TGTACGTACGTGTACCGTATAGATG
LOC_Os01g41710
Target Sequence 
GACGCATCGCCTTCAGCTAAGCTAGCTAGGTTGACGACGATGCGCGTCTCTGCAGGAGAGTGTGCGTGTGTGTACGCGGT
GCAGTAGATGTACGTACGTGTACCGTATAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7941.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis