Browse Element(s) Details


OsAffx.9161.1.S1_x_at

Description gb:NM_192637.1
DB_XREF= gi:34912357
GEN=P0518F01.15
TID=OsAffx.9161.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0518F01.15 (P0518F01.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g417208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9161.1.S1_x_at--243--10191Chr01:23939268..23939292 (25 bp)
TATAGCACATTTGGCTTCACGGCTT
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--111--7051Chr01:23939135..23939159 (25 bp)
GTAAATATGTCTTCGGTGCCGCTGA
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--1117--8311Chr01:23938503..23938527 (25 bp)
GGCTCTTCACCATCCAAGATGTGAT
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--966--2791Chr01:23938488..23938512 (25 bp)
AAGATGTGATGCAGAGCACCCTCCG
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--67--5371Chr01:23938279..23938303 (25 bp)
GAAGAGCCTTCGCATTACGCATAAC
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--916--411Chr01:23938218..23938242 (25 bp)
ATCATCGCCGGATTGTTCGGAATCA
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--294--4551Chr01:23938137..23938161 (25 bp)
GCGCTGCTTTTCTTGGTAGGACTCC
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--210--6931Chr01:23938122..23938146 (25 bp)
GTAGGACTCCTGCTGATCATCGTGG
LOC_Os01g41720
OsAffx.9161.1.S1_x_at--381--6311Chr01:23937836..23938086 (25 bp)
GATGAGCAGGTCCAGCTTCATTTCC
NONE
OsAffx.9161.1.S1_x_at--774--1551Chr01:23937823..23937847 (25 bp)
AGCTTCATTTCCGTTTTGCATGGTC
NONE
OsAffx.9161.1.S1_x_at--1021--10711Chr01:23937808..23937832 (25 bp)
TTGCATGGTCGAGCACGATCTGGGC
NONE
Target Sequence 
TATAGCACATTTGGCTTCACGGCTTGCCCGATGGGATGACAGATTGTGGCGTAAATATGTCTTCGGTGCCGCTGATGAAA
TAGAACTTAAATTTGTAAACAGGGAGGAGATAATTTTTGAGCTGCTGAAGTATCTAGGAGGCAGCACCACAAAATCATTA
CTTGAAGCGATAAAGAAAGACGCAAGACAAATGATTGAAGAGCAGGAGGCAGTTCGTGGCCGGCTCTTCACCATCCAAGA
TGTGATGCAGAGCACCCTCCGTGCTTGGTCACAGGAGAAGAGCCTTCGCATTACGCATAACCTGACAATTTTCGGTGGGT
GTGGCTTGGTTCTGTCCATCATCGCCGGATTGTTCGGAATCAATGTTGATGGGATACCAGGAGCTGAGAACACTCCCTAC
GCTTTCGCGCTATTCTCCGCGCTGCTTTTCTTGGTAGGACTCCTGCTGATCATCGTGGGGATAGTCTATTTCGGACTGCA
GAAGCCGATCAGCGATGAGCAGGTCCAGCTTCATTTCCGTTTTGCATGGTCGAGCACGATCTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9161.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis