Browse Element(s) Details


OsAffx.9161.2.S1_at

Description tigr:9629.m03991
TID=OsAffx.9161.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4172011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified
LOC_Os01g41700NANA1+23928701..23931934transposon protein, putative, unclassified
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9161.2.S1_at--44--5591Chr01:23938643..23938667 (25 bp)
GAAATGGTCACTGCATGCTAGGGAG
LOC_Os01g41720
OsAffx.9161.2.S1_at--1162--10011Chr01:23938037..23938061 (25 bp)
TAGAGCTCCAGGAACTGGTCTCGAT
LOC_Os01g41720
OsAffx.9161.2.S1_at--95--2571Chr01:23938025..23938049 (25 bp)
AACTGGTCTCGATGTTCCAGCACGA
LOC_Os01g41720
OsAffx.9161.2.S1_at--18--8611Chr01:23938022..23938046 (25 bp)
TGGTCTCGATGTTCCAGCACGAAGC
LOC_Os01g41720
OsAffx.9161.2.S1_at--158--6291Chr01:23938015..23938039 (25 bp)
GATGTTCCAGCACGAAGCCGAGACA
LOC_Os01g41720
OsAffx.9161.2.S1_at--7--2671Chr01:23938001..23938025 (25 bp)
AAGCCGAGACACACGCCAGGGTGAA
LOC_Os01g41720
OsAffx.9161.2.S1_at--1018--5971Chr01:23937996..23938020 (25 bp)
GAGACACACGCCAGGGTGAAAGAAG
LOC_Os01g41720
OsAffx.9161.2.S1_at--417--10771Chr01:23937966..23937990 (25 bp)
TTGAGGACTGACTTGCCTCCCAGAG
LOC_Os01g41720
OsAffx.9161.2.S1_at--323--8951Chr01:23937958..23937982 (25 bp)
TGACTTGCCTCCCAGAGCTGCCGAT
LOC_Os01g41720
OsAffx.9161.2.S1_at--201--3431Chr01:23937946..23937970 (25 bp)
CAGAGCTGCCGATCTCATATGTGAT
LOC_Os01g41720
OsAffx.9161.2.S1_at--1003--4771Chr01:23937942..23937966 (25 bp)
GCTGCCGATCTCATATGTGATGATA
LOC_Os01g41720
Target Sequence 
GAAATGGTCACTGCATGCTAGGGAGGAGATAATTTTTGAGCTGCTGAAGTATCTAGGAGGCAGCACCACAAAATCATTAC
TTGAAGCGATAAAGAAAGACGCAAGACAAATGATTGAAGAGCAGGAGGCAGTTCGTGGCCGGCTCTTCACCATCCAAGAT
GTGATGCAGAGCACCCTCCGTGCTTGGTCACAGGAGAAGAGCCTTCGCATTACGCATAACCTGACAATTTTCGGTGGGTG
TGGCTTGGTTCTGTCCATCATCGCCGGATTGTTCGGAATCAATGTTGATGGGATACCAGGAGCTGAGAACACTCCCTACG
CTTTCGCGCTATTCTCCGCGCTGCTTTTCTTGGTAGGACTCCTGCTGATCATCGTGGGGATAGTCTATTTCGGACTGCAG
AAGCCGATCAGCGATGAGCAGGTCCAGGTGAGGAAGTTAGAGCTCCAGGAACTGGTCTCGATGTTCCAGCACGAAGCCGA
GACACACGCCAGGGTGAAAGAAGGGGTCTTGAGGACTGACTTGCCTCCCAGAGCTGCCGATCTCATATGTGATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9161.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis