Browse Element(s) Details


OsAffx.21394.1.S1_at

Description tigr:9629.m03996
TID=OsAffx.21394.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4177011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21394.1.S1_at--349--8551Chr01:23967240..23967264 (25 bp)
TGGAGTCCCTTGATTTGTCACACAA
LOC_Os01g41770
OsAffx.21394.1.S1_at--1063--3191Chr01:23967218..23967242 (25 bp)
CAATGTGCTTTCTGGTGGGATTCCC
LOC_Os01g41770
OsAffx.21394.1.S1_at--310--7671Chr01:23967202..23967226 (25 bp)
GGGATTCCCAGCAGTATAGCATCTC
LOC_Os01g41770
OsAffx.21394.1.S1_at--636--291Chr01:23967187..23967211 (25 bp)
ATAGCATCTCTTACCTACTTGAGCC
LOC_Os01g41770
OsAffx.21394.1.S1_at--419--5371Chr01:23967097..23967121 (25 bp)
GAAGACCCTGCATCTATGTATGTTG
LOC_Os01g41770
OsAffx.21394.1.S1_at--298--5531Chr01:23967072..23967096 (25 bp)
GAAACATCGATCTCTGTGGGCATCC
LOC_Os01g41770
OsAffx.21394.1.S1_at--143--7491Chr01:23967057..23967081 (25 bp)
GTGGGCATCCTCTACCAAATAACTG
LOC_Os01g41770
OsAffx.21394.1.S1_at--360--191Chr01:23966981..23967005 (25 bp)
ATTTCACTTCAGCATGATCATCGGT
LOC_Os01g41770
OsAffx.21394.1.S1_at--925--6431Chr01:23966966..23966990 (25 bp)
GATCATCGGTTTCATGGTTGGCCTC
LOC_Os01g41770
OsAffx.21394.1.S1_at--548--6611Chr01:23966950..23966974 (25 bp)
GTTGGCCTCTTGCTAGTATTCTATT
LOC_Os01g41770
OsAffx.21394.1.S1_at--886--6871Chr01:23966935..23966959 (25 bp)
GTATTCTATTTTATGCTCTTCAGCA
LOC_Os01g41770
Target Sequence 
TGGAGTCCCTTGATTTGTCACACAATGTGCTTTCTGGTGGGATTCCCAGCAGTATAGCATCTCTTACCTACTTGAGCCAC
ATGAATTTGTCGTACAACAATCTTTCTGGAAGAATTCCAGCAGGAAATCAACTCGACATTCTTGAAGACCCTGCATCTAT
GTATGTTGGAAACATCGATCTCTGTGGGCATCCTCTACCAAATAACTGCTCTATCAATGGTGATACTAAAATTGAACGAG
ATGACTTGGTCAACATGTCATTTCACTTCAGCATGATCATCGGTTTCATGGTTGGCCTCTTGCTAGTATTCTATTTTATG
CTCTTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis