Browse Element(s) Details


Os.50498.1.S1_at

Description gb:AK121464.1
DB_XREF= gi:37991087
TID=Os.50498.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145F10, full insert sequence.
FL= gb:AK121464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0354911/11Spore coat protein A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03530Os.23181.1.S1_at11/111+1430798..1433611Multicopper oxidase family protein, expressed
LOC_Os01g03549Os.50498.1.S1_at11/111+1433965..1442401Spore coat protein A, putative, expressed
LOC_Os01g03570Os.26958.1.S1_at11/111+1443664..1447275X1, putative, expressed
LOC_Os01g03580NANA1+1448279..1451484transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g03590NANA1+1454749..1456784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g03600OsAffx.22848.3.S1_x_at3/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03600OsAffx.22848.4.S1_at2/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g03600OsAffx.22848.4.S1_x_at1/111+1464537..1468604retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50498.1.S1_at--1136--5831Chr01:1441761..1441785 (25 bp)
GACCTCAAGGAGTGCATGATGGCGC
LOC_Os01g03549
Os.50498.1.S1_at--439--891Chr01:1442144..1442168 (25 bp)
AGGCCGATGAAGATTGTGCGCTAGT
LOC_Os01g03549
Os.50498.1.S1_at--762--7291Chr01:1442159..1442183 (25 bp)
GTGCGCTAGTACGTGTCCATAGGAA
LOC_Os01g03549
Os.50498.1.S1_at--936--8211Chr01:1442180..1442204 (25 bp)
GGAATTATGTATGCACTTCAGTAAC
LOC_Os01g03549
Os.50498.1.S1_at--91--171Chr01:1442208..1442232 (25 bp)
ATTTTGTGCCATACTCCTACATAGG
LOC_Os01g03549
Os.50498.1.S1_at--25--6611Chr01:1442232..1442256 (25 bp)
GATTGGGATCCTCTGACGTTCTGAC
LOC_Os01g03549
Os.50498.1.S1_at--262--10613Chr12:19873344..19873380 (24 bp)
TTCTGACGACGTGGTGACTGACATG
NONE
Os.50498.1.S1_at--684--7111Chr01:1442302..1442326 (25 bp)
GTCAGTGACCACGTCCGTGTGCAGT
LOC_Os01g03549
Os.50498.1.S1_at--1157--5012Chr01:1442322..1442346 (25 bp)
GCAGTTCACGTTAGAGGATCCGGTT
LOC_Os01g03549
Os.50498.1.S1_at--1052--551Chr01:1442339..1442363 (25 bp)
ATCCGGTTCCTCCTATATATGTGTA
LOC_Os01g03549
Os.50498.1.S1_at--1014--3331Chr01:1442370..1442394 (25 bp)
CACGTGAACATACACATGTGCATTT
LOC_Os01g03549
Target Sequence 
GACCTCAAGGAGTGCATGATGGCGCGGGGCAGCGGCGGCGGCGGCGCGGACGCGTGCGGGCTGGAGCGGCACCTCGCCGG
CGGGAGGAAGCACGTGGTGCCGAAGCAGGAGCGCGGGTGGAAGAACGTGTTCAAGGTGCGGCCGGGCACGGTGACGAGGC
TGCTGGTGCGGTTCCGGCCGCTGTCGCCGCCGGACAGCCGCCGCTTCCCCTTCGACGTCGCCGCCGGCCCCGGCTACGTC
TACCACTGCCACATTCTGGACCACGAAGACAACGAGATGATGAGGCCGATGAAGATTGTGCGCTAGTACGTGTCCATAGG
AATTATGTATGCACTTCAGTAACATAATTTTGTGCCATACTCCTACATAGGATTGGGATCCTCTGACGTTCTGACGACGT
GGTGACTGACATGTGAGCCCCACCGCTTGTGGGCCCACCTGTCAGTGACCACGTCCGTGTGCAGTTCACGTTAGAGGATC
CGGTTCCTCCTATATATGTGTATCTANCNCACGTGAACATACACATGTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis