Browse Element(s) Details


Os.19834.1.S1_at

Description gb:AK121927.1
DB_XREF= gi:37991550
TID=Os.19834.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative WD40-repeat protein (P0037C04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106G21, full insert sequence.
FL= gb:AK121927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0351011/1166 kDa stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03452OsAffx.31552.2.S1_at10/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_x_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.11270.1.S1_at6/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.3.S1_x_at5/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.31552.1.S1_x_at4/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_x_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.22940.1.S1_s_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452Os.6098.1.A1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.3613.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03452OsAffx.23624.1.S1_at1/111+1383210..1391278hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03464OsAffx.23100.1.S1_x_at11/111+1392782..1393839hypothetical protein
LOC_Os01g03480OsAffx.23101.2.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.2.S1_s_at11/111+1398306..1400400expressed protein
LOC_Os01g03480OsAffx.23101.1.S1_at11/111+1398306..1400400expressed protein
LOC_Os01g03490Os.962.1.S1_at11/111+1401617..1403989heavy metal-associated domain containing protein, expressed
LOC_Os01g03500Os.45460.1.S1_at10/111+1407789..1409895expressed protein
LOC_Os01g03500Os.45460.2.S1_x_at5/111+1407789..1409895expressed protein
LOC_Os01g03510Os.19834.1.S1_at11/111+1410641..141578466 kDa stress protein, putative, expressed
LOC_Os01g03520Os.965.2.S1_x_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03520Os.965.1.S1_at11/111+1418495..1424845Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g03530Os.23181.1.S1_at11/111+1430798..1433611Multicopper oxidase family protein, expressed
LOC_Os01g03549Os.50498.1.S1_at11/111+1433965..1442401Spore coat protein A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19834.1.S1_at--333--731Chr01:1415214..1415238 (25 bp)
ATGTTGTTCCACTCAGCTCGGATAA
LOC_Os01g03510
Os.19834.1.S1_at--256--4791Chr01:1415229..1415253 (25 bp)
GCTCGGATAAACTGCCTGGCTTGGT
LOC_Os01g03510
Os.19834.1.S1_at--804--8591Chr01:1415250..1415274 (25 bp)
TGGTCACCTGACAATCGCCTGGTTG
LOC_Os01g03510
Os.19834.1.S1_at--749--911Chr01:1415279..1415303 (25 bp)
AGGCTCATTGGACACCTGTGCAATT
LOC_Os01g03510
Os.19834.1.S1_at--156--2931Chr01:1415347..1415371 (25 bp)
AAGGAGCTCATCTTGGTGGAGTCCA
LOC_Os01g03510
Os.19834.1.S1_at--769--7271Chr01:1415445..1415469 (25 bp)
GTGCCACAATAGATGTTCTCCCTGA
LOC_Os01g03510
Os.19834.1.S1_at--95--8371Chr01:1415482..1415506 (25 bp)
GGCGTGTCTTCGTCACTTGATTGAA
LOC_Os01g03510
Os.19834.1.S1_at--542--31Chr01:1415513..1415537 (25 bp)
ATTGTTTGCACTTGTCCCTTAGGGT
LOC_Os01g03510
Os.19834.1.S1_at--280--731Chr01:1415556..1415580 (25 bp)
ATGTTGCGACGCAGTTGGCCTTGAG
LOC_Os01g03510
Os.19834.1.S1_at--562--51Chr01:1415621..1415645 (25 bp)
ATTGTTGTTATTTTATCCCTGCGTC
LOC_Os01g03510
Os.19834.1.S1_at--912--7051Chr01:1415705..1415729 (25 bp)
GTAACCTGCACATGGCTGTATCTGT
LOC_Os01g03510
Target Sequence 
ATGTTGTTCCACTCAGCTCGGATAAACTGCCTGGCTTGGTCACCTGACAATCGCCTGGTTGCCACAGGCTCATTGGACAC
CTGTGCAATTGTATATGAAATAGACAAGCCAGCATCCAGCCGCATCACCGTAAAAGGAGCTCATCTTGGTGGAGTCCATG
GTTTAACCTTTGTCGATAATGATAGTCTGGTGACTGCTGGGGAGGATGCATGCATCCGAGTTTGGAAGCTGGTGCCACAA
TAGATGTTCTCCCTGATGTTGCCTGTTGGGCGTGTCTTCGTCACTTGATTGAAATAAACATTGTTTGCACTTGTCCCTTA
GGGTGTCTGCGATTNTTTTCCTATGTTGCGACGCAGTTGGCCTTGAGTNGCATTTTCTTTTTNTTGCATTTCNGNAANNA
ACTTGTTGATTGTTGTTATTTTATCCCTGCGTCTGATTTTGTTANGGAACTGANNAATTCANGGGATGCTGTCTTTTTTT
TTNCCTTCCTCCGNTTTGTAACCTGCACATGGCTGTATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis