Browse Element(s) Details


OsAffx.19821.1.S1_at

Description tigr:9640.m02433
TID=OsAffx.19821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2547011/11hypothetical protein
LOC_Os06g170702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g316202/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25440OsAffx.19819.1.S1_at9/1112+14705125..14707634hypothetical protein
LOC_Os12g25440OsAffx.9474.1.S1_x_at1/1112+14705125..14707634hypothetical protein
LOC_Os12g25450OsAffx.19820.1.S1_at10/1112+14711479..14713796O-methyltransferase ZRP4, putative, expressed
LOC_Os12g25460OsAffx.11386.1.S1_x_at7/1112+14728807..14730304retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25460OsAffx.4856.1.S1_x_at3/1112+14728807..14730304retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25460OsAffx.4856.1.S1_at3/1112+14728807..14730304retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25470OsAffx.19821.1.S1_at11/1112+14732149..14732421hypothetical protein
LOC_Os12g25470OsAffx.19821.1.S1_x_at11/1112+14732149..14732421hypothetical protein
LOC_Os12g25480NANA12+14740269..14740655transposon protein, putative, unclassified
LOC_Os12g25490OsAffx.31880.1.S1_at9/1112+14745703..14749592O-methyltransferase ZRP4, putative, expressed
LOC_Os12g25490Os.21280.1.S1_at7/1112+14745703..14749592O-methyltransferase ZRP4, putative, expressed
LOC_Os12g25494Os.49589.1.S1_at10/1112+14751694..14755322transposon protein, putative, unclassified, expressed
LOC_Os12g25500OsAffx.31069.5.S1_at5/1112+14755442..14758860transposon protein, putative, unclassified
LOC_Os12g25500OsAffx.31069.5.S1_x_at3/1112+14755442..14758860transposon protein, putative, unclassified
LOC_Os12g25500Os.53479.1.S1_x_at2/1112+14755442..14758860transposon protein, putative, unclassified
LOC_Os12g25500Os.2987.3.S1_x_at2/1112+14755442..14758860transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19821.1.S1_at--134--4791Chr12:14732206..14732230 (25 bp)
GCTGCCGCCGTCCTAGAGATAGCAC
LOC_Os12g25470
OsAffx.19821.1.S1_at--236--3831Chr12:14732207..14732231 (25 bp)
CTGCCGCCGTCCTAGAGATAGCACG
LOC_Os12g25470
OsAffx.19821.1.S1_at--50--9171Chr12:14732208..14732232 (25 bp)
TGCCGCCGTCCTAGAGATAGCACGC
LOC_Os12g25470
OsAffx.19821.1.S1_at--140--4491Chr12:14732212..14732236 (25 bp)
GCCGTCCTAGAGATAGCACGCCAGG
LOC_Os12g25470
OsAffx.19821.1.S1_at--325--4251Chr12:14732213..14732237 (25 bp)
CCGTCCTAGAGATAGCACGCCAGGA
LOC_Os12g25470
OsAffx.19821.1.S1_at--1034--3991Chr12:14732214..14732238 (25 bp)
CGTCCTAGAGATAGCACGCCAGGAG
LOC_Os12g25470
OsAffx.19821.1.S1_at--164--7271Chr12:14732215..14732239 (25 bp)
GTCCTAGAGATAGCACGCCAGGAGC
LOC_Os12g25470
OsAffx.19821.1.S1_at--499--9251Chr12:14732216..14732240 (25 bp)
TCCTAGAGATAGCACGCCAGGAGCC
LOC_Os12g25470
OsAffx.19821.1.S1_at--85--4311Chr12:14732217..14732241 (25 bp)
CCTAGAGATAGCACGCCAGGAGCCG
LOC_Os12g25470
OsAffx.19821.1.S1_at--385--8275Chr12:14732271..14732295 (25 bp)
GGCAGTTCTGCGGAGGGACATTCTC
LOC_Os12g25470
OsAffx.19821.1.S1_at--395--5035Chr12:14732272..14732296 (25 bp)
GCAGTTCTGCGGAGGGACATTCTCG
LOC_Os12g25470
Target Sequence 
GCTGCCGCCGTCCTAGAGATAGCACGCCAGGAGCCGGAGCCGCTGCGAACGTCAACGTCAACAGAGGCAGTTCTGCGGAG
GGACATTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis