Browse Element(s) Details


OsAffx.9474.1.S1_x_at

Description gb:NM_191023.1
DB_XREF= gi:34909129
GEN=P0468B07.8
TID=OsAffx.9474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0468B07.8 (P0468B07.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g594209/11expressed protein
LOC_Os08g153001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g254401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59390OsAffx.21870.3.S1_x_at11/111+34670389..34671469hypothetical protein
LOC_Os01g59390OsAffx.21870.2.S1_x_at11/111+34670389..34671469hypothetical protein
LOC_Os01g59400NANA1+34678229..34678708hypothetical protein
LOC_Os01g59410NANA1+34683489..34684299VQ motif family protein, expressed
LOC_Os01g59420Os.46769.1.S1_at11/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.9474.1.S1_x_at9/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.2524.2.S1_at1/111+34690946..34694404expressed protein
LOC_Os01g59430OsAffx.2364.2.S1_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59430OsAffx.2364.2.S1_x_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9474.1.S1_x_at--397--9111Chr01:34693860..34693884 (25 bp)
TGCTCCAAGCGGCAGTCCGCCAGAT
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--965--3431Chr01:34693872..34693896 (25 bp)
CAGTCCGCCAGATCGGCGAGGAGTC
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--805--4251Chr01:34693924..34693948 (25 bp)
CCGGCACTCGGCTAGATGGGATCGA
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--836--1991Chr01:34693929..34693953 (25 bp)
ACTCGGCTAGATGGGATCGACCGCA
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--277--5792Chr01:34693977..34694001 (25 bp)
GACGACGACCTCCAGATGACGACTG
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--30--9232Chr01:34693987..34694009 (23 bp)
TCCAGATGACGACTGCCAGATGGCG
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--656--6394Chr08:27005021..27005045 (25 bp)
GATCGGGTCGGCCATGCCCTCCAGA
NONE
OsAffx.9474.1.S1_x_at--195--611Chr01:34694286..34694310 (25 bp)
ATGCCCTCCAGATCGGCGATGACGA
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--684--4352Chr01:34694293..34694317 (25 bp)
CCAGATCGGCGATGACGATGTGGAT
LOC_Os01g59420
OsAffx.9474.1.S1_x_at--995--1391Chr01:34696042..34696066 (25 bp)
AGACTTGGCGTGAGGCAGCCGACGA
NONE
OsAffx.9474.1.S1_x_at--50--1331Chr01:34696091..34696115 (25 bp)
AGAGGTGGAGAGAGACGGCCGGCAC
NONE
Target Sequence 
TGCTCCAAGCGGCAGTCCGCCAGATCGGCGAGGAGTCCGGGCGGAGATGGCGACGACAGCGAGGCCGGCACTCGGCTAGA
TGGGATCGACCGCAACGACGACGACCTCGACCGCAACGACGACGACCTCCAGATGACGACTGCCAGATGGCGGCGGAGGC
GGCCGCCGAGGAGGAACCGGCAGGGACGTGTCCCCCGTACTCTGTGCCGCGCCAACGACGCCACGACGACCATGGCAACG
CCGGCGCCCGGTGAGGCCGACGACCAGCGGGCGGCGCGGCCTACCGGCGACGTCGGGGTGCTGGTGGAGATCGGGTCGGC
CATGCCCTCCAGATCGGCGATGACGATGTGGATGTGGAAGGGAGGGGAGGAGGGGGAGGAGAGAGGGGAGGAGGAGATGG
GGCGCGGCGGAAGACTTGGCGTGAGGCAGCCGACGACGGAGCAGGAGCGACGGCAGGGGGAGAGGTGGAGAGAGACGGCC
GGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9474.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis