Browse Element(s) Details


OsAffx.2364.2.S1_x_at

Description tigr:9629.m05837
TID=OsAffx.2364.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5943011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59400NANA1+34678229..34678708hypothetical protein
LOC_Os01g59410NANA1+34683489..34684299VQ motif family protein, expressed
LOC_Os01g59420Os.46769.1.S1_at11/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.9474.1.S1_x_at9/111+34690946..34694404expressed protein
LOC_Os01g59420OsAffx.2524.2.S1_at1/111+34690946..34694404expressed protein
LOC_Os01g59430OsAffx.2364.2.S1_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59430OsAffx.2364.2.S1_x_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2364.2.S1_x_at--618--7611Chr01:34702904..34702928 (25 bp)
GGGAAGAGGAACGACGCGCACTCCA
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--1092--91Chr01:34702880..34702904 (25 bp)
ATTCTGCACATTCCAAGCGAGACAT
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--316--3851Chr01:34702877..34702901 (25 bp)
CTGCACATTCCAAGCGAGACATACG
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--830--3591Chr01:34702872..34702896 (25 bp)
CATTCCAAGCGAGACATACGATAGA
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--757--6492Chr01:33848467..33848491 (25 bp)
GATAGACGAAGGAAGCGCCCACCCA
NONE
OsAffx.2364.2.S1_x_at--955--2912Chr01:33848475..33848499 (25 bp)
AAGGAAGCGCCCACCCAGCAGGAGG
NONE
OsAffx.2364.2.S1_x_at--490--1071Chr01:34702823..34702847 (25 bp)
AGGGCTCCGTCCAGTGGCGACTTCC
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--486--1091Chr01:34702811..34702835 (25 bp)
AGTGGCGACTTCCATCTAGCTTTGG
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--858--8471Chr01:34702809..34702833 (25 bp)
TGGCGACTTCCATCTAGCTTTGGCT
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--117--4611Chr01:34702807..34702831 (25 bp)
GCGACTTCCATCTAGCTTTGGCTCT
LOC_Os01g59430
OsAffx.2364.2.S1_x_at--605--9991Chr01:34702795..34702819 (25 bp)
TAGCTTTGGCTCTTTTCCAGCTTTT
LOC_Os01g59430
Target Sequence 
GGGAAGAGGAACGACGCGCACTCCATTCTGCACATTCCAAGCGAGACATACGATAGACGAAGGAAGCGCCCACCCAGCAG
GAGGGCTCCGTCCAGTGGCGACTTCCATCTAGCTTTGGCTCTTTTCCAGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2364.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis