Browse Element(s) Details


OsAffx.23857.1.S1_at

Description tigr:9629.m05842
TID=OsAffx.23857.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5947011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59430OsAffx.2364.2.S1_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59430OsAffx.2364.2.S1_x_at11/111+34702707..34703270hypothetical protein
LOC_Os01g59440Os.10369.1.S1_a_at10/111+34705945..34709933BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23857.1.S1_at--826--471Chr01:34726732..34726756 (25 bp)
ATCTGCTGCACTTGCGCTGGAGAAA
LOC_Os01g59470
OsAffx.23857.1.S1_at--376--10711Chr01:34726743..34726767 (25 bp)
TTGCGCTGGAGAAAGCCACCGAGCT
LOC_Os01g59470
OsAffx.23857.1.S1_at--134--1431Chr01:34726752..34726776 (25 bp)
AGAAAGCCACCGAGCTGAGCATGGG
LOC_Os01g59470
OsAffx.23857.1.S1_at--300--2451Chr01:34726783..34726807 (25 bp)
AAAATTGGAGTCAGCGGCCACCTGT
LOC_Os01g59470
OsAffx.23857.1.S1_at--330--1171Chr01:34726791..34726815 (25 bp)
AGTCAGCGGCCACCTGTTGCAGGCT
LOC_Os01g59470
OsAffx.23857.1.S1_at--346--6671Chr01:34726806..34726830 (25 bp)
GTTGCAGGCTTCTGGCCGAGCTGTA
LOC_Os01g59470
OsAffx.23857.1.S1_at--393--8071Chr01:34726848..34726872 (25 bp)
GGAGCAAGGCTATGATTCACTTCCA
LOC_Os01g59470
OsAffx.23857.1.S1_at--102--10511Chr01:34726863..34726887 (25 bp)
TTCACTTCCAAGATGCCGCGTATAG
LOC_Os01g59470
OsAffx.23857.1.S1_at--1101--4211Chr01:34726878..34726902 (25 bp)
CCGCGTATAGCTATGGTGGCTGTGC
LOC_Os01g59470
OsAffx.23857.1.S1_at--116--1651Chr01:34726904..34726928 (25 bp)
AGCGAGGAGTCCGTGTTCTATGCCC
LOC_Os01g59470
OsAffx.23857.1.S1_at--1106--10131Chr01:34726922..34726946 (25 bp)
TATGCCCGCCACTGTATGCTCAAGG
LOC_Os01g59470
Target Sequence 
ATCTGCTGCACTTGCGCTGGAGAAAGCCACCGAGCTGAGCATGGGGAGGAAAAAATTGGAGTCAGCGGCCACCTGTTGCA
GGCTTCTGGCCGAGCTGTACGAGGAGCAGAAAGAGTGGAGCAAGGCTATGATTCACTTCCAAGATGCCGCGTATAGCTAT
GGTGGCTGTGCGAGCGAGGAGTCCGTGTTCTATGCCCGCCACTGTATGCTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis