Browse Element(s) Details


Os.33770.1.S1_s_at

Description gb:AK071916.1
DB_XREF= gi:32981939
TID=Os.33770.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0468B07.18 (P0468B07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071K12, full insert sequence.
FL= gb:AK104320.1 gb:AK099056.1 gb:AK071916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5951011/11ribonuclease III family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59450OsAffx.2365.1.S1_at11/111+34712575..34716255hypothetical protein
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0004525molecular_functionribonuclease III activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33770.1.S1_s_at--396--4271Chr01:34740341..34740365 (25 bp)
CCTGCACCACTACATTATCTACGGG
LOC_Os01g59510
Os.33770.1.S1_s_at--1108--6091Chr01:34740316..34740340 (25 bp)
GAGTCGGTGCAAGACAGATTTGAAC
LOC_Os01g59510
Os.33770.1.S1_s_at--417--1251Chr01:34740301..34740325 (25 bp)
AGATTTGAACACAACCGCCGGCTGA
LOC_Os01g59510
Os.33770.1.S1_s_at--285--4491Chr01:34740285..34740309 (25 bp)
GCCGGCTGAGAAATCCTTCCACGAC
LOC_Os01g59510
Os.33770.1.S1_s_at--1--7271Chr01:34740256..34740280 (25 bp)
GTCCAGCAAGCAATACACGGCCTTG
LOC_Os01g59510
Os.33770.1.S1_s_at--1061--3051Chr01:34740245..34740269 (25 bp)
AATACACGGCCTTGCTTACTGCGTC
LOC_Os01g59510
Os.33770.1.S1_s_at--21--10431Chr01:34740230..34740254 (25 bp)
TTACTGCGTCTATGGCAAACCGGAT
LOC_Os01g59510
Os.33770.1.S1_s_at--696--2371Chr01:34740214..34740238 (25 bp)
AAACCGGATGTAAGGCGATTGATGT
LOC_Os01g59510
Os.33770.1.S1_s_at--78--6871Chr01:34739799..34739823 (25 bp)
GTTTGTAATAGATCTGCAGAACATC
LOC_Os01g59510
Os.33770.1.S1_s_at--334--5051Chr01:34739784..34739808 (25 bp)
GCAGAACATCTTTGCAACCAATGAT
LOC_Os01g59510
Os.33770.1.S1_s_at--262--5171Chr01:34739771..34739795 (25 bp)
GCAACCAATGATACAAGCAGCTTCA
LOC_Os01g59510
Target Sequence 
CCTGCACCACTACATTATCTACGGGGAGTCGGTGCAAGACAGATTTGAACACAACCGCCGGCTGAGAAATCCTTCCACGA
CCGCCGTCCAGCAAGCAATACACGGCCTTGCTTACTGCGTCTATGGCAAACCGGATGTAAGGCGATTGATGTTCGAGGTG
TTTGACTTCGAACAGGTCCAGCCAAAAGCAGTATGAGGGTGGTCACAAAACCTGTGCTTGTGCTGAGCTGCTGATACGCT
GACATTACCGGCGTTTGAAAGCTGAAATGCTTCAGTGTTGTGACCTGTGAACAGATCCAAGCGCAGACAGTTCTGAGTCT
GATCCCCGAAGTCGAAAAGCAGGTTAACACACGTAACTCATGCACCCTCGTTTCTACGAGATGAACTGGATTAGAGATGT
TGTAAATCGAACGCTGTTGTTTTCTGAATTTACAGTTTTGACGATTTGATGTAAATTTCCATTTGAGCAGAAAATGCAAG
CAGCATCAGAGACAAAAAACAGCATAGGAAGAATTTTTCCTGTGAAACATGCTTGTAAAGGAGTTTGTAATAGATCTGCA
GAACATCTTTGCAACCAATGATACAAGCAGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33770.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis