Browse Element(s) Details


OsAffx.985.3.S1_x_at

Description gb:NM_191037.1
DB_XREF= gi:34909157
GEN=P0468B07.22
TID=OsAffx.985.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) receptor protein kinase-like (P0468B07.22), mRNA.
PROD=receptor protein kinase-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5956011/11Protein kinase domain containing protein, expressed
LOC_Os01g595502/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.985.3.S1_x_at--590--9592Chr01:34766596..34766620 (25 bp)
TCTTGTGGCCATGATATCTGACTTT
LOC_Os01g59560
OsAffx.985.3.S1_x_at--836--5672Chr01:34766577..34766601 (25 bp)
GACTTTGGTCTTTCACGATCTTACA
LOC_Os01g59560
OsAffx.985.3.S1_x_at--1066--231Chr01:34766535..34766559 (25 bp)
ATATCAACTGTTGCTGCCGGTACTG
LOC_Os01g59560
OsAffx.985.3.S1_x_at--477--9911Chr01:34766515..34766539 (25 bp)
TACTGTTGGCTACCTTGACCCTGAG
LOC_Os01g59560
OsAffx.985.3.S1_x_at--30--10751Chr01:34766382..34766525 (25 bp)
TTGACCCTGAGTACCATGCTACTTT
LOC_Os01g59560
OsAffx.985.3.S1_x_at--355--9451Chr01:34766325..34766349 (25 bp)
TCGGCATTGTCCTCTTGGAGATCAT
LOC_Os01g59560
OsAffx.985.3.S1_x_at--493--8051Chr01:34766309..34766333 (25 bp)
GGAGATCATTACTGGCCAACCTTCA
LOC_Os01g59560
OsAffx.985.3.S1_x_at--955--2631Chr01:34766292..34766316 (25 bp)
AACCTTCAGTGTTAGTGGACTCAGA
LOC_Os01g59560
OsAffx.985.3.S1_x_at--1089--1271Chr01:34766153..34766177 (25 bp)
AGATCTTGCCATGAGCTGTGTGGAA
LOC_Os01g59560
OsAffx.985.3.S1_x_at--324--3011Chr01:34766051..34766075 (25 bp)
AATGCAACTGGTGTCTAGGTCCTAT
LOC_Os01g59560
OsAffx.985.3.S1_x_at--1134--9991Chr01:34765998..34766022 (25 bp)
TAGCGAGGCAATTCCAGCTGCTGAT
LOC_Os01g59560
Target Sequence 
TCTTGTGGCCATGATATCTGACTTTGGTCTTTCACGATCTTACACTCCAGCGCACACACACATATCAACTGTTGCTGCCG
GTACTGTTGGCTACCTTGACCCTGAGTACCATGCTACTTTCCACCTCACTGTGAAAGCAGATGTCTACAGCTTCGGCATT
GTCCTCTTGGAGATCATTACTGGCCAACCTTCAGTGTTAGTGGACTCAGAACCAGTGCACCTACCAAACTGGGTGCGCCA
AAAGATTGCTGAAGGGAGCATTCATGATGCTGTAGACAGTAGACTAAGGCATCAGTATGATGCCACTTCCATACAGAGTG
TCATAGATCTTGCCATGAGCTGTGTGGAAAACACATCCACTGATAGGCCAAGCATGACTGACATTGTTATCAAGCTCAAA
GAATGCCTACCGGCAGGTACAGGTGAAATGCAACTGGTGTCTAGGTCCTATAAACAGAAGGAAGCCATGGACGCTGACAT
AGCGAGGCAATTCCAGCTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.985.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis