Browse Element(s) Details


Os.18744.1.S1_at

Description gb:AU032052
DB_XREF= gi:3768025
DB_XREF=AU032052
CLONE=R3369_3Z
TID=Os.18744.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.18744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) receptor protein kinase-like (P0468B07.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5957011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18744.1.S1_at--654--1391Chr01:34773157..34773181 (25 bp)
AGACTGTGATAGACCTCGCCATGAA
LOC_Os01g59570
Os.18744.1.S1_at--181--5471Chr01:34773135..34773159 (25 bp)
GAACTGCCTCGAAAACGCATCGATT
LOC_Os01g59570
Os.18744.1.S1_at--189--10811Chr01:34773088..34773112 (25 bp)
TTGTTTCCGTGCTTAAGGTGTGCTT
LOC_Os01g59570
Os.18744.1.S1_at--31--4891Chr01:34773078..34773102 (25 bp)
GCTTAAGGTGTGCTTGCCGATTTCA
LOC_Os01g59570
Os.18744.1.S1_at--684--10691Chr01:34773065..34773089 (25 bp)
TTGCCGATTTCAAGCGAGAGACAAT
LOC_Os01g59570
Os.18744.1.S1_at--422--4611Chr01:34773052..34773076 (25 bp)
GCGAGAGACAATCGGCAACTTCAAC
LOC_Os01g59570
Os.18744.1.S1_at--389--6051Chr01:34772999..34773023 (25 bp)
GAGATTCCAAGACAGTTCCAGTTGA
LOC_Os01g59570
Os.18744.1.S1_at--1076--2451Chr01:34772955..34772979 (25 bp)
AACAAGCTACGAGGGCAGCTCCTTT
LOC_Os01g59570
Os.18744.1.S1_at--467--5071Chr01:34772941..34772965 (25 bp)
GCAGCTCCTTTCAGTCTGGATATAC
LOC_Os01g59570
Os.18744.1.S1_at--762--351Chr01:34772900..34772924 (25 bp)
ATAAGCCACATTTCTGGGCGGTGAA
LOC_Os01g59570
Os.18744.1.S1_at--518--2391Chr01:34772777..34772801 (25 bp)
AAACATTTTCGTGAAGCCATCTGGG
LOC_Os01g59570
Target Sequence 
AGACTGTGATAGACCTCGCCATGAACTGCCTCGAAAACGCATCGATTGACAGGCCAAGCATGACCGAGGTTGTTTCCGTG
CTTAAGGTGTGCTTGCCGATTTCAAGCGAGAGACAATCGGCAACTTCAACCCCTCGAAAGAAGAACGTCATGGATGCAGA
GATTCCAAGACAGTTCCAGTTGATGATTTCTGGAGCTTCAACAACAAGCTACGAGGGCAGCTCCTTTCAGTCTGGATATA
CCGGTGGGGTATCAGAAATAAGCCACATTTCTGGGCGGTGAAAGGAAATTNCTATTTGTTACATATGCTGGGAGATGGTT
TGATCATTTGCTTGCNCCATGTCGTTGTGACTTAAGAATGGATGTGTGTATATTGGATTTAAACATTTTCGTGAAGCCAT
CTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis