Browse Element(s) Details


OsAffx.31569.1.S1_x_at

Description tigr:9640.m00297
TID=OsAffx.31569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC005917 putative WD-40 repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g038168/11Calmodulin, putative, expressed
LOC_Os11g039804/11Calmodulin-6, putative
LOC_Os12g038222/11Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os10g067901/11hypothetical protein
LOC_Os01g595301/11Calmodulin, putative, expressed
LOC_Os11g039901/11Glutamate-rich WD repeat-containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein
LOC_Os12g03810Os.10274.4.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810OsAffx.31568.1.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810Os.10274.1.S1_a_at10/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03816Os.10274.3.S1_at11/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03816OsAffx.31569.1.S1_x_at8/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03822Os.49735.1.S1_x_at11/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03822OsAffx.31569.1.S1_x_at2/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03830Os.18707.1.S1_at1/1112+1567001..1571324major facilitator superfamily antiporter, putative
LOC_Os12g03840NANA12+1572521..1573733retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03850NANA12+1574190..1576956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006625biological_processprotein targeting to peroxisome
GO:0009612biological_processresponse to mechanical stimulus
GO:0009652biological_processthigmotropism
GO:0009826biological_processunidimensional cell growth
GO:0009908biological_processflower development
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0004871molecular_functionsignal transducer activity
GO:0005053molecular_functionperoxisome targeting signal-2 binding
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31569.1.S1_x_at--1127--2512Chr12:1561741..1561761 (21 bp)
AACTTCTCTTTGTTCATCAGGGCCA
LOC_Os12g03822
OsAffx.31569.1.S1_x_at--478--2731Chr12:1561529..1561553 (25 bp)
AAGAATTGCACTGGCATCCACAGAT
LOC_Os12g03822
OsAffx.31569.1.S1_x_at--333--9211NONE
TCCACAGATACCTAAGAATTTGCTT
NONE
OsAffx.31569.1.S1_x_at--322--5231Chr12:1560339..1560363 (25 bp)
GAATTTGCTTCTTGTGTTACTAATA
LOC_Os12g03816
OsAffx.31569.1.S1_x_at--889--6191Chr12:1560303..1560327 (25 bp)
GAGGCAATTAATGGACCACCTGACA
LOC_Os12g03816
OsAffx.31569.1.S1_x_at--155--1291Chr12:1560271..1560295 (25 bp)
AGATCGCCGAGTTCCGGGAGGCATT
LOC_Os12g03816
OsAffx.31569.1.S1_x_at--785--7652Chr12:1560256..1560280 (25 bp)
GGGAGGCATTCAACCTGTTCGACAA
LOC_Os12g03816
OsAffx.31569.1.S1_x_at--431--512Chr12:1560025..1560049 (25 bp)
ATCGAGTTCGAGGAGTTCCTGGGCC
LOC_Os12g03816
OsAffx.31569.1.S1_x_at--795--9295Chr01:34749820..34749844 (25 bp)
TCCGCGTCTTCGACAAGGACCAGAA
LOC_Os01g59530
OsAffx.31569.1.S1_x_at--329--8392Chr12:1559818..1559842 (25 bp)
GGCGACGGCCAGATCAACTACAACG
LOC_Os12g03816
OsAffx.31569.1.S1_x_at--943--2532Chr12:1559806..1559827 (22 bp)
AACTACAACGAGTTCCTCAAGGCGA
LOC_Os12g03816
Target Sequence 
AACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAAGAATTTGCTTCTT
GTGTTACTAATAATCTTTGAGGGGAGGCAATTAATGGACCACCTGACAAAGGAGCAGATCGCCGAGTTCCGGGAGGCATT
CAACCTGTTCGACAAAGATGGAGACGGGACGATCACGAGCAAGGAGCTTGGGACGGTGATGGGGTCGCTGGGGCAGTCGC
CGACGGAGGCGGAGCTGAAGAAGATGGTGGAGGAGGTGGACGCGGACGGCAGCGGCAGCATCGAGTTCGAGGAGTTCCTG
GGCCTCCTCGCCCGCAAGCTTCGCGACACCGGCGCCGAGGACGACATCCGCGACGCCTTCCGCGTCTTCGACAAGGACCA
GAACGGCTTCATCACCCCCGACGAGCTCCGCCACGTCATGGCCAACCTCAGCGACCCCCTCTCCGACGACGAGCTCGCCG
ACATGCTCCACGAGGCCGACTCCGACGGCGACGGCCAGATCAACTACAACGAGTTCCTCAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31569.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis