Browse Element(s) Details


Os.18707.1.S1_at

Description gb:AK069533.1
DB_XREF= gi:32979557
TID=Os.18707.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019M18, full insert sequence.
FL= gb:AK069533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0402010/11major facilitator superfamily antiporter, putative, expressed
LOC_Os12g038301/11major facilitator superfamily antiporter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03960OsAffx.13097.1.S1_s_at11/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960Os.27037.1.A1_at1/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03970Os.10274.4.S1_at11/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970Os.10274.1.S1_a_at10/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970OsAffx.31568.1.S1_at5/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03980OsAffx.31569.1.S1_x_at4/1111+1608336..1609068Calmodulin-6, putative
LOC_Os11g03990Os.49735.2.S1_at10/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990Os.49735.1.S1_x_at8/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990OsAffx.31569.1.S1_x_at1/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g04000NANA11+1614764..1616642expressed protein
LOC_Os11g04010Os.7189.1.S1_at10/1111+1615991..1617301latex-abundant protein, putative, expressed
LOC_Os11g04020Os.18707.1.S1_at10/1111+1617495..1622979major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04030Os.6142.1.S1_s_at11/1111+1625486..1630412major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04040NANA11+1633652..1635917retrotransposon protein, putative, unclassified
LOC_Os11g04050NANA11+1638660..1638989hypothetical protein
LOC_Os11g04060NANA11+1640193..1644545major facilitator superfamily antiporter, putative
LOC_Os11g04070Os.25811.1.S1_at1/1111+1645485..164785460S acidic ribosomal protein P0, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18707.1.S1_at--755--5011Chr12:1567223..1567499 (25 bp)
GCAGGAGCTCTGTTCTCTTGGGCCC
LOC_Os12g03830
Os.18707.1.S1_at--544--10491Chr11:1617938..1617962 (25 bp)
TTAATTGGACTTGCGTTGACCTTCA
LOC_Os11g04020
Os.18707.1.S1_at--472--10491Chr11:1617917..1617941 (25 bp)
TTCAAGCCGTTCCTGGCAATACCAA
LOC_Os11g04020
Os.18707.1.S1_at--650--6731Chr11:1617706..1617730 (25 bp)
GTTCTTCTTTCCATGAAGACCCTAT
LOC_Os11g04020
Os.18707.1.S1_at--1063--5291Chr11:1617632..1617656 (25 bp)
GAAGGCAGTGCAATGACTACTAATT
LOC_Os11g04020
Os.18707.1.S1_at--594--10451Chr11:1617607..1617631 (25 bp)
TTAGCTTCCACATTTCTTGTACGCA
LOC_Os11g04020
Os.18707.1.S1_at--395--191Chr11:1617596..1617620 (25 bp)
ATTTCTTGTACGCAAGCCTGTCTCT
LOC_Os11g04020
Os.18707.1.S1_at--157--9511Chr11:1617574..1617598 (25 bp)
TCTCTCCCCAGCTTCAAAGGAATGG
LOC_Os11g04020
Os.18707.1.S1_at--294--8051Chr11:1617549..1617573 (25 bp)
GGAGATCTTGTTTCATGCGTACAGT
LOC_Os11g04020
Os.18707.1.S1_at--1040--6611Chr11:1617524..1617548 (25 bp)
GTTGGATGTTTACTACTCCGAATCA
LOC_Os11g04020
Os.18707.1.S1_at--1045--1991Chr11:1617510..1617534 (25 bp)
ACTCCGAATCAATCAATTACCCAGG
LOC_Os11g04020
Target Sequence 
GCAGGAGCTCTGTTCTCTTGGGCCCNAGNACGCCNAAATGAAGCNNTNTTNCNCAGGGGATCANATGATANTCTNNATNC
TGAATGTGATTGAATTAATTGGACTTGCGTTGACCTTCAAGCCGTTCCTGGCAATACCAAATTANAACAATTATCAGTNG
AAGTAGAAGCTGGAATAGCACCCCCAAGCAATGAAGAATTATTATGCAAGACTACNACTGTGTTGTGGTTTACTGAATTG
ATGTTTGGCTTAAGTGATGTACATAGAAATATATGGCCCATCTTCANAATCATAAAATNAATGTACAAGAGACTGTTTAT
CTGAAAATGTTCTTCTTTCCATGAAGACCCTATGTATGGTGATGGATTAGAGTTTACATTGCGTGGATGCAAGCATAGAC
TTGAAGGCAGTGCAATGACTACTAATTTTAGCTTCCACATTTCTTGTACGCAAGCCTGTCTCTCTCCCCAGCTTCAAAGG
AATGGGGAGATCTTGTTTCATGCGTACAGTGTTGGATGTTTACTACTCCGAATCAATCAATTACCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis