Browse Element(s) Details


Os.7189.1.S1_at

Description gb:AK064966.1
DB_XREF= gi:32974984
TID=Os.7189.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B03, full insert sequence.
FL= gb:AK104380.1 gb:AK104210.1 gb:AK064966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0401010/11latex-abundant protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03950Os.47463.1.S1_x_at6/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03950Os.14491.2.S1_x_at4/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960OsAffx.13097.1.S1_s_at11/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960Os.27037.1.A1_at1/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03970Os.10274.4.S1_at11/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970Os.10274.1.S1_a_at10/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970OsAffx.31568.1.S1_at5/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03980OsAffx.31569.1.S1_x_at4/1111+1608336..1609068Calmodulin-6, putative
LOC_Os11g03990Os.49735.2.S1_at10/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990Os.49735.1.S1_x_at8/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990OsAffx.31569.1.S1_x_at1/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g04000NANA11+1614764..1616642expressed protein
LOC_Os11g04010Os.7189.1.S1_at10/1111+1615991..1617301latex-abundant protein, putative, expressed
LOC_Os11g04020Os.18707.1.S1_at10/1111+1617495..1622979major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04030Os.6142.1.S1_s_at11/1111+1625486..1630412major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04040NANA11+1633652..1635917retrotransposon protein, putative, unclassified
LOC_Os11g04050NANA11+1638660..1638989hypothetical protein
LOC_Os11g04060NANA11+1640193..1644545major facilitator superfamily antiporter, putative

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7189.1.S1_at--966--4971Chr11:1616466..1616490 (25 bp)
GCATCCTGCTGAGCGGGTGCCAGAC
LOC_Os11g04010
Os.7189.1.S1_at--481--6751Chr11:1616375..1616399 (25 bp)
GTTCAGCAACGCGATACAGACCGTG
LOC_Os11g04010
Os.7189.1.S1_at--387--8911Chr11:1616328..1616352 (25 bp)
TGAGCAACCGGCAGCTGGTGAGCAT
LOC_Os11g04010
Os.7189.1.S1_at--899--4071Chr11:1616234..1616258 (25 bp)
CGAGACGCCATTCCTGTGGCAAGAG
LOC_Os11g04010
Os.7189.1.S1_at--623--1531Chr11:1616175..1616199 (25 bp)
AGCAGGCCATGACGGCGCTCTGAAT
LOC_Os11g04010
Os.7189.1.S1_at--108--5751Chr11:1616165..1616189 (25 bp)
GACGGCGCTCTGAATGTGTTCGACA
LOC_Os11g04010
Os.7189.1.S1_at--326--6611Chr11:1616130..1616154 (25 bp)
GATTGGTCAATACCGATCATTGGGA
LOC_Os11g04010
Os.7189.1.S1_at--663--9751Chr11:1616085..1616109 (25 bp)
TAATCGTCTTATTCAATGCCACAAC
LOC_Os11g04010
Os.7189.1.S1_at--394--591Chr11:1616070..1616094 (25 bp)
ATGCCACAACAAGTTACCATTGCAA
LOC_Os11g04010
Os.7189.1.S1_at--839--3111Chr11:1616046..1616070 (25 bp)
AATTTGTATGCCATCATGCTGAAGG
LOC_Os11g04010
Os.7189.1.S1_at--357--10191Chr11:1615991..1616015 (25 bp)
TATATCATCAGTTCAGTATTGTTAC
NONE
Target Sequence 
GCATCCTGCTGAGCGGGTGCCAGACGGACGAGACGTCGGCGGACGTGCCGGGGGACGACGAGGTGGCGGCGGGCGGCAAG
GCGTGCGGCGCGTTCAGCAACGCGATACAGACCGTGCTGGCGTCGCACCNGGCGCCGGTGAGCAACCGGCAGCTGGTGAG
CATGGCCAGGGCGGTGCTGAGCGATCAGGGGTTCGAGCAGCACCCGTGCCTCTACTGCAGCGACGGCAACGCCGAGACGC
CATTCCTGTGGCAAGAGGAGGACAAGAAGAAGACGGTTACCGCGGCGGCGGAGCAGGCCATGACGGCGCTCTGAATGTGT
TCGACAGAGGAAGATTGATTGGTCAATACCGATCATTGGGAAAAAAATAAGATTATAATTTTAATCGTCTTATTCAATGC
CACAACAAGTTACCATTGCAAATTTGTATGCCATCATGCTGAAGGAACATGTTTATTGATTTTTACAATGATGAATATAT
CATCAGTTCAGTATTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis