Browse Element(s) Details


Os.6142.1.S1_s_at

Description gb:AK121911.1
DB_XREF= gi:37991534
TID=Os.6142.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105P18, full insert sequence.
FL= gb:AK121911.1 gb:AK066565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0403011/11major facilitator superfamily antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03970Os.10274.4.S1_at11/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970Os.10274.1.S1_a_at10/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970OsAffx.31568.1.S1_at5/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03980OsAffx.31569.1.S1_x_at4/1111+1608336..1609068Calmodulin-6, putative
LOC_Os11g03990Os.49735.2.S1_at10/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990Os.49735.1.S1_x_at8/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990OsAffx.31569.1.S1_x_at1/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g04000NANA11+1614764..1616642expressed protein
LOC_Os11g04010Os.7189.1.S1_at10/1111+1615991..1617301latex-abundant protein, putative, expressed
LOC_Os11g04020Os.18707.1.S1_at10/1111+1617495..1622979major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04030Os.6142.1.S1_s_at11/1111+1625486..1630412major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04040NANA11+1633652..1635917retrotransposon protein, putative, unclassified
LOC_Os11g04050NANA11+1638660..1638989hypothetical protein
LOC_Os11g04060NANA11+1640193..1644545major facilitator superfamily antiporter, putative
LOC_Os11g04070Os.25811.1.S1_at1/1111+1645485..164785460S acidic ribosomal protein P0, putative, expressed
LOC_Os11g04080Os.20602.2.S1_x_at11/1111+1648846..1651020hAT family dimerisation domain containing protein
LOC_Os11g04090NANA11+1654934..1655377retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6142.1.S1_s_at--510--2571Chr11:1626550..1626574 (25 bp)
AACGGAATAGCTACAACGGCCATGT
LOC_Os11g04030
Os.6142.1.S1_s_at--179--3411Chr11:1626000..1626023 (24 bp)
CAGCATGCAGCATTTTTTCCAGGTG
LOC_Os11g04030
Os.6142.1.S1_s_at--300--7731Chr11:1625803..1625827 (25 bp)
GGTGTTTCTTTTACTGAACCTGACT
LOC_Os11g04030
Os.6142.1.S1_s_at--621--10731Chr11:1625760..1625784 (25 bp)
TTGACCTTCAAACCTTTCTTGGCGG
LOC_Os11g04030
Os.6142.1.S1_s_at--777--10551Chr11:1625745..1625769 (25 bp)
TTCTTGGCGGTTCCTCAACAATACA
LOC_Os11g04030
Os.6142.1.S1_s_at--1046--6471Chr11:1625707..1625731 (25 bp)
GATACTGTCAGCTGGTGTGGCAAAC
LOC_Os11g04030
Os.6142.1.S1_s_at--601--6771Chr11:1625608..1625632 (25 bp)
GTTAGAAACATGCACCATTCCAGGT
LOC_Os11g04030
Os.6142.1.S1_s_at--534--3591Chr11:1625593..1625617 (25 bp)
CATTCCAGGTGCAGAGCCTCTGTTA
LOC_Os11g04030
Os.6142.1.S1_s_at--471--1371Chr11:1625581..1625605 (25 bp)
AGAGCCTCTGTTAGGTTGTTCTTCT
LOC_Os11g04030
Os.6142.1.S1_s_at--1040--10251Chr11:1625555..1625579 (25 bp)
TTTGTTCTGCTTTGGGTCTGTGAGA
LOC_Os11g04030
Os.6142.1.S1_s_at--759--8951Chr11:1625509..1625533 (25 bp)
TGACATTTTTTATTGCAGCTTTGGA
LOC_Os11g04030
Target Sequence 
AACGGAATAGCTACAACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTNTATTNTCTTGGGCACA
AAAGCGACAGCATGCAGCATTTTTTCCAGGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
TGTTGACCTTCAAACCTTTCTTGGCGGTTCCTCAACAATACAAATAGAACATTCAGATACTGTCAGCTGGTGTGGCAAAC
ACCATAGAGAGATAGTTGTAGCTAGTACTATGTTTTAGTATTAAAACATGGTTTAGATATGGTTGTAGCAGAGTGTTAGA
AACATGCACCATTCCAGGTGCAGAGCCTCTGTTAGGTTGTTCTTCTTTTTGTTCTGCTTTGGGTCTGTGAGATAAATAAT
CTTGCAAAAGCTATGACATTTTTTATTGCAGCTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6142.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis