Browse Element(s) Details


Os.49735.1.S1_x_at

Description gb:AK111507.1
DB_XREF= gi:37988170
TID=Os.49735.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E23, full insert sequence.
FL= gb:AK111507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0382211/11Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g039908/11Glutamate-rich WD repeat-containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein
LOC_Os12g03810Os.10274.4.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810OsAffx.31568.1.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810Os.10274.1.S1_a_at10/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03816Os.10274.3.S1_at11/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03816OsAffx.31569.1.S1_x_at8/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03822Os.49735.1.S1_x_at11/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03822OsAffx.31569.1.S1_x_at2/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03830Os.18707.1.S1_at1/1112+1567001..1571324major facilitator superfamily antiporter, putative
LOC_Os12g03840NANA12+1572521..1573733retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03850NANA12+1574190..1576956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0009826biological_processunidimensional cell growth
GO:0009908biological_processflower development
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005053molecular_functionperoxisome targeting signal-2 binding
GO:0005515molecular_functionprotein binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49735.1.S1_x_at--499--2912Chr12:1562073..1562096 (24 bp)
AAGGATGACTCCTTGGTCGCCCATT
LOC_Os12g03822
Os.49735.1.S1_x_at--1102--10251Chr12:1562049..1562073 (25 bp)
TTTGAATACCACAAGCACCCGATTA
LOC_Os12g03822
Os.49735.1.S1_x_at--330--5292Chr12:1562016..1562040 (25 bp)
GAATGGAGCCCACATGAACCGTCAA
LOC_Os12g03822
Os.49735.1.S1_x_at--36--5452Chr12:1562001..1562025 (25 bp)
GAACCGTCAACACTAGCTGTATCAT
LOC_Os12g03822
Os.49735.1.S1_x_at--522--3872Chr12:1561985..1562009 (25 bp)
CTGTATCATCAGCTGACCATCAACT
LOC_Os12g03822
Os.49735.1.S1_x_at--667--912Chr12:1561767..1561791 (25 bp)
AGGCTGATGCCCCTGAAGATTTACC
LOC_Os12g03822
Os.49735.1.S1_x_at--1128--2512Chr12:1561741..1561761 (21 bp)
AACTTCTCTTTGTTCATCAGGGCCA
LOC_Os12g03822
Os.49735.1.S1_x_at--479--2731Chr12:1561529..1561553 (25 bp)
AAGAATTGCACTGGCATCCACAGAT
LOC_Os12g03822
Os.49735.1.S1_x_at--897--6912Chr12:1561499..1561523 (25 bp)
GTATGATCATATCTACGGCAGCTGA
LOC_Os12g03822
Os.49735.1.S1_x_at--1089--6891Chr12:1561302..1561326 (25 bp)
GTATCCTAGTTTCGTTGTCATTCAT
LOC_Os12g03822
Os.49735.1.S1_x_at--346--1212Chr12:1561263..1561287 (25 bp)
AGTTTTGCACTGATGTCGCCCGAAT
LOC_Os12g03822
Target Sequence 
AAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTC
AACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAG
AGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAG
AAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATACAATATGTT
GATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAGATTTCTACAGTAGTTGTTTATCTGAATCAAGGTT
TCATGGGTTTTTTTTTTTTTTGAAGTGGATGAGTGTAATGATACTGCATGTCTACAAGTATCAGTTTTTGATAGCTTGTA
TCCTAGTTTCGTTGTCATTCATAGTGGTAGGTTCTCAGTTTTGCACTGATGTCGCCCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49735.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis