Browse Element(s) Details


OsAffx.12206.1.S1_at

Description tigr:9630.m02499
TID=OsAffx.12206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2652011/11hypothetical protein
LOC_Os12g037701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26480Os.49460.1.S1_at10/112+15543448..15552430Serine carboxypeptidase I precursor, putative, expressed
LOC_Os02g26490OsAffx.20858.5.S1_x_at8/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.1.S1_x_at6/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.4.S1_x_at4/112+15552665..15555486hypothetical protein
LOC_Os02g26500Os.11575.4.S1_x_at4/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26500Os.11575.3.S1_x_at1/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26510OsAffx.24433.1.S1_at11/112+15560201..15562653hypothetical protein
LOC_Os02g26520OsAffx.12206.1.S1_at11/112+15565940..15567537hypothetical protein
LOC_Os02g26530OsAffx.24434.1.S1_at11/112+15568665..15569111hypothetical protein
LOC_Os02g26540NANA2+15571271..15571507hypothetical protein
LOC_Os02g26550OsAffx.24436.2.S1_at10/112+15578247..15584223expressed protein
LOC_Os02g26550Os.27457.1.S1_at2/112+15578247..15584223expressed protein
LOC_Os02g26560OsAffx.12207.1.S1_at11/112+15589114..15591960expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12206.1.S1_at--403--1671Chr02:15567468..15567492 (25 bp)
AGCCTCCTCCACATGTATTTGTCGT
LOC_Os02g26520
OsAffx.12206.1.S1_at--230--9431Chr02:15567447..15567471 (25 bp)
TCGTGGACACTTGACTTGCCAATGT
LOC_Os02g26520
OsAffx.12206.1.S1_at--618--9131Chr02:15567270..15567424 (25 bp)
TGCGGCCGACGGTTTGAATGAAAAC
LOC_Os02g26520
OsAffx.12206.1.S1_at--528--2371Chr02:15567249..15567273 (25 bp)
AAACCTTTCTTCAATTAGCATATGC
LOC_Os02g26520
OsAffx.12206.1.S1_at--493--5032Chr12:1537753..1537786 (25 bp)
GCAGTAGCAGCAGGTGTCCTTCGGA
LOC_Os12g03770
OsAffx.12206.1.S1_at--884--31Chr02:15567203..15567226 (24 bp)
ATTGGGATGTTTTCTTCGGGCAGGA
LOC_Os02g26520
OsAffx.12206.1.S1_at--951--8251Chr02:15566438..15566459 (22 bp)
GGCAGGAATTGGCTCTAACTCTATA
LOC_Os02g26520
OsAffx.12206.1.S1_at--843--1212Chr05:3193319..3193550 (25 bp)
AGTTCAGCTAGTCAAGGAGTACCTT
NONE
OsAffx.12206.1.S1_at--522--10011Chr02:15566006..15566030 (25 bp)
TAGCTCAACATTTCTTCAAGGATTG
LOC_Os02g26520
OsAffx.12206.1.S1_at--173--7931Chr02:15565987..15566011 (25 bp)
GGATTGCTCAACATTTCTTCAAGGA
LOC_Os02g26520
OsAffx.12206.1.S1_at--1130--10471Chr02:15565970..15565994 (25 bp)
TTCAAGGATTGTCCTTCTGTACGAC
LOC_Os02g26520
Target Sequence 
AGCCTCCTCCACATGTATTTGTCGTGGACACTTGACTTGCCAATGTGGAGAAGGATCGGCGCGGCGAATGCGGCCGACGG
TTTGAATGAAAACCTTTCTTCAATTAGCATATGCAGTAGCAGCAGGTGTCCTTCGGATTGGGATGTTTTCTTCGGGCAGG
AATTGGCTCTAACTCTATATAAGTACGTCAAAAGAAAAGAAAGGTCAGTGCAGGAAAGACTAACTAATGACCAATGGATA
GAAGACATCAAGCACAACCTCATAGTTCAGCTAGTCAAGGAGTACCTTGAGGAATCTAGAAATAGCTCAACATTTCTTCA
AGGATTGCTCAACATTTCTTCAAGGATTGTCCTTCTGTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis