Browse Element(s) Details


Os.49460.1.S1_at

Description gb:AK107401.1
DB_XREF= gi:32992610
TID=Os.49460.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D10, full insert sequence.
FL= gb:AK107401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2648010/11Serine carboxypeptidase I precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26440Os.39418.1.S1_s_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440OsAffx.12203.1.S1_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440Os.39418.1.S1_at4/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26450OsAffx.12204.1.S1_at11/112+15523769..15526038transposon protein, putative, unclassified
LOC_Os02g26460OsAffx.12205.1.S1_at11/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26460OsAffx.15672.1.S1_x_at1/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26470OsAffx.2760.1.S1_at11/112+15537844..15538277expressed protein
LOC_Os02g26480Os.49460.1.S1_at10/112+15543448..15552430Serine carboxypeptidase I precursor, putative, expressed
LOC_Os02g26490OsAffx.20858.5.S1_x_at8/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.1.S1_x_at6/112+15552665..15555486hypothetical protein
LOC_Os02g26490OsAffx.20858.4.S1_x_at4/112+15552665..15555486hypothetical protein
LOC_Os02g26500Os.11575.4.S1_x_at4/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26500Os.11575.3.S1_x_at1/112+15556364..15560053transposon protein, putative, Pong sub-class
LOC_Os02g26510OsAffx.24433.1.S1_at11/112+15560201..15562653hypothetical protein
LOC_Os02g26520OsAffx.12206.1.S1_at11/112+15565940..15567537hypothetical protein
LOC_Os02g26530OsAffx.24434.1.S1_at11/112+15568665..15569111hypothetical protein
LOC_Os02g26540NANA2+15571271..15571507hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49460.1.S1_at--652--131Chr02:15547543..15547567 (25 bp)
ATTCACTGTGTAATCCAGCTGTTGA
LOC_Os02g26480
Os.49460.1.S1_at--1131--1811Chr02:15547501..15547525 (25 bp)
ACGCGTTTGTACCTTATGCATTTCG
LOC_Os02g26480
Os.49460.1.S1_at--675--1291Chr02:15547072..15547096 (25 bp)
AGATGTTTGAGCTCCTTTCCGAAAG
LOC_Os02g26480
Os.49460.1.S1_at--728--10291Chr02:15547057..15547081 (25 bp)
TTTCCGAAAGCTCCGAGTATGGTTT
LOC_Os02g26480
Os.49460.1.S1_at--920--3171Chr02:15544916..15544937 (22 bp)
AATTGGAGATCATGCCTTGCTTGTC
LOC_Os02g26480
Os.49460.1.S1_at--1025--3611Chr02:15544897..15544921 (25 bp)
CTTGTCCCATTTTCTGCAACTTTAG
LOC_Os02g26480
Os.49460.1.S1_at--1133--2291Chr02:15544837..15544861 (25 bp)
AAATGGCATCCATGGTTTGTAGAGA
LOC_Os02g26480
Os.49460.1.S1_at--720--51NONE
ATTGCAGGGTATTCAGTTCGGTATG
NONE
Os.49460.1.S1_at--184--2451Chr02:15543608..15543733 (25 bp)
AACAATCAAGGGAGCTGGCCATGTC
LOC_Os02g26480
Os.49460.1.S1_at--355--771Chr02:15543588..15543612 (25 bp)
ATGTCCCATCAGATTACCTGCCATT
LOC_Os02g26480
Os.49460.1.S1_at--1119--1751Chr02:15543573..15543597 (25 bp)
ACCTGCCATTTGAAGTATTTGTTGC
LOC_Os02g26480
Target Sequence 
ATTCACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCATTTCGAATGGGATTGATT
TCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGAAGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAA
CTTGGAACAGTTTCATAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTA
TGGTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTAT
AAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACT
ATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis