Browse Element(s) Details


OsAffx.15672.1.S1_x_at

Description tigr:9634.m02865
TID=OsAffx.15672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g192304/11hypothetical protein
LOC_Os02g139301/11expressed protein
LOC_Os02g264601/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein
LOC_Os02g19230OsAffx.12116.1.S1_at11/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_x_at4/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_at2/112+11223363..11225006hypothetical protein
LOC_Os02g19240OsAffx.24322.1.S1_at11/112+11227245..11227445hypothetical protein
LOC_Os02g19250OsAffx.31133.2.S1_at1/112+11227974..11230703transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15672.1.S1_x_at--1066--7111Chr06:17201779..17201803 (25 bp)
GTCTTATGATAGCTCCTGACATTCA
NONE
OsAffx.15672.1.S1_x_at--22--8452Chr06:17201862..17201886 (25 bp)
GGCCATGATGTGTTTTGCTTGCTAA
NONE
OsAffx.15672.1.S1_x_at--174--4111Chr06:17201912..17201936 (25 bp)
CGAAGAGAAAATGCCCGTGGTGTTG
NONE
OsAffx.15672.1.S1_x_at--1021--8151Chr06:17201996..17202020 (25 bp)
GGAAACAACAGCCTCATACCTCAAG
NONE
OsAffx.15672.1.S1_x_at--669--6551Chr06:17202299..17202323 (25 bp)
GATTAGAGACATCCATAGTGAGCAT
NONE
OsAffx.15672.1.S1_x_at--56--5931Chr06:17202318..17202342 (25 bp)
GAGCATGTGAGCAAGGCATTAGGTT
NONE
OsAffx.15672.1.S1_x_at--302--10072Chr06:17202337..17202361 (25 bp)
TAGGTTGTGGGCTACTTCAAAGTGG
NONE
OsAffx.15672.1.S1_x_at--1004--2871Chr06:17202364..17202388 (25 bp)
AAGGGTTGAACCAAGAGCAATCTCT
NONE
OsAffx.15672.1.S1_x_at--902--1351Chr06:17202377..17202401 (25 bp)
AGAGCAATCTCTTCAAGGGCCAGGA
NONE
OsAffx.15672.1.S1_x_at--822--6474Chr06:17202402..17202426 (25 bp)
GATACTCGTTGGAGTTCTCATTACA
NONE
OsAffx.15672.1.S1_x_at--97--7852Chr06:17202443..17202467 (25 bp)
GGTAGATATGTTCCCAACAATTGTT
NONE
Target Sequence 
GTCTTATGATAGCTCCTGACATTCAAAAGGATATTGTTGAATGCTTTGCCAAAGAAATATTACATTCCATTTTGAATGAA
CTTGGCCATGATGTGTTTTGCTTGCTAATTGATGAGTCAAGAGATATTTCTTGCGAAGAGAAAATGCCCGTGGTGTTGAG
GTACGTTGATAAATGTGGAATTGTGAAAGAAAGGTTTGTTGGTGTTGTTCATGTGAAGGAAACAACAGCCTCATACCTCA
AGGCTTCTATTGATACTCTAATGGTAGATTTTAATCTAAGCTTGAGTCAAGTTAGAGGCCAAGGATATGATGGGGCTAGT
AATATGCGAGCTAAGAGAAGGGACATGATTAGAGACATCCATAGTGAGCATGTGAGCAAGGCATTAGGTTGTGGGCTACT
TCAAAGTGGAAAAGGGTTGAACCAAGAGCAATCTCTTCAAGGGCCAGGAGATACTCGTTGGAGTTCTCATTACAAAACTC
TCAAAAGTTTGGTAGATATGTTCCCAACAATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15672.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis