Browse Element(s) Details


OsAffx.12116.1.S1_at

Description tigr:9630.m01834
TID=OsAffx.12116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1923011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19210Os.17401.1.S1_at11/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19210Os.2427.1.S1_at1/112+11199423..11205673WD-repeat protein 26, putative, expressed
LOC_Os02g19220Os.27045.1.S1_a_at11/112+11209105..11217046expressed protein
LOC_Os02g19230OsAffx.12116.1.S1_at11/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_x_at4/112+11223363..11225006hypothetical protein
LOC_Os02g19230OsAffx.15672.1.S1_at2/112+11223363..11225006hypothetical protein
LOC_Os02g19240OsAffx.24322.1.S1_at11/112+11227245..11227445hypothetical protein
LOC_Os02g19250OsAffx.31133.2.S1_at1/112+11227974..11230703transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12116.1.S1_at--1054--9831Chr02:11224330..11224354 (25 bp)
TAAAGAGCAAATGGCCGTGGTGTTG
LOC_Os02g19230
OsAffx.12116.1.S1_at--475--7392Chr06:17202243..17202264 (22 bp)
GTGAGTATGATTTCTACCTTGTTAA
NONE
OsAffx.12116.1.S1_at--437--7511Chr02:11224000..11224024 (25 bp)
GTGGTTCAGCTAAGAGACAGGACAT
LOC_Os02g19230
OsAffx.12116.1.S1_at--367--5651Chr02:11223985..11224009 (25 bp)
GACAGGACATGGTTAGAGACATCAA
LOC_Os02g19230
OsAffx.12116.1.S1_at--448--5271Chr02:11223627..11223651 (25 bp)
GAATGCGGTTAAATGTGTGAGATCT
LOC_Os02g19230
OsAffx.12116.1.S1_at--316--7471Chr02:11223613..11223637 (25 bp)
GTGTGAGATCTACAAGAGGTCATTT
LOC_Os02g19230
OsAffx.12116.1.S1_at--1079--9592Chr06:17202680..17202704 (25 bp)
TCATTTGGATGACCTTAGAAGACAT
NONE
OsAffx.12116.1.S1_at--731--1352Chr06:17202719..17202743 (25 bp)
AGAGAGTGATGTGTATAACTTCTGT
NONE
OsAffx.12116.1.S1_at--789--5611Chr02:11223530..11223554 (25 bp)
GACAAATATGATCTTACCAAACTGG
LOC_Os02g19230
OsAffx.12116.1.S1_at--813--5412Chr06:17202797..17202821 (25 bp)
GAAGCCAAGGCAAAAAACAGGAATT
NONE
OsAffx.12116.1.S1_at--1018--9711Chr02:11223396..11223420 (25 bp)
TCAAGAGCTAGACAATCGCTTTAAT
LOC_Os02g19230
Target Sequence
TAAAGAGCAAATGGCCGTGGTGTTGAGGTACGTTGATAAATGTGGAATTGTGAAAGAAAGGTTTGTTGCTGTTGTTCATG
TGAGGGAAACAACGGCCTCATACCTCAAGGCTTCTATTGATGCTCTAATGGCAGATTTTAATCTAAGCTTGAGTCAATTA
GTAGTTGTGGCTATTGTGAGTATGATTTCTACCTTGTTAAATGTGGTTGGTGGTTCAGCTAAGAGACAGGACATGGTTAG
AGACATCAATGATGAGCATGATCAAGATATTGTGAATGCGGTTAAATGTGTGAGATCTACAAGAGGTCATTTGGATGACC
TTAGAAGACATGGATGGGAAAAATTAGAGAGTGATGTGTATAACTTCTGTGACAAATATGATCTTACCAAACTGGAGATG
GGAGAAGTATACATTAATCCAAAGAAGCCAAGGCAAAAAACAGGAATTACAAACAAGCATCATTATGAAGTGGATTGTTT
TAATAATGTTATTGATTGGTTACTTCAAGAGCTAGACAATCGCTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis