Browse Element(s) Details


Os.27045.1.S1_a_at

Description gb:AK070497.1
DB_XREF= gi:32980521
TID=Os.27045.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054B07, full insert sequence.
FL= gb:AK102545.1 gb:AK070497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1933011/11expressed protein
LOC_Os02g1922011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19280OsAffx.2681.1.S1_at11/112+11265363..11271755expressed protein
LOC_Os02g19290OsAffx.12117.1.S1_at11/112+11273052..11273980hypothetical protein
LOC_Os02g19300OsAffx.8279.1.S1_at2/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300Os.52731.1.S1_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300OsAffx.22699.1.S1_x_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19310Os.27066.1.A1_x_at3/112+11284509..11287664hypothetical protein
LOC_Os02g19320OsAffx.2683.1.S1_at11/112+11289886..11290579hypothetical protein
LOC_Os02g19330Os.27045.1.S1_a_at11/112+11292717..11300266expressed protein
LOC_Os02g19340NANA2+11301327..11301638hypothetical protein
LOC_Os02g19350NANA2+11305198..11308941hypothetical protein
LOC_Os02g19360NANA2+11309095..11310567hypothetical protein
LOC_Os02g19370NANA2+11312071..11313481hypothetical protein
LOC_Os02g19380OsAffx.24324.1.S1_at10/112+11316688..11318611microfibril-associated protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27045.1.S1_a_at--997--6012Chr02:11293258..11293282 (25 bp)
GAGAGGGTTGGAGCATCGATAAACA
LOC_Os02g19330
Os.27045.1.S1_a_at--932--7892Chr02:11293137..11293161 (25 bp)
GGATGTGTTTTTGTTACTGGGAAGT
LOC_Os02g19330
Os.27045.1.S1_a_at--820--6772Chr02:11293125..11293149 (25 bp)
GTTACTGGGAAGTTTCTTCCTGAGT
LOC_Os02g19330
Os.27045.1.S1_a_at--1067--5312Chr02:11293117..11293141 (25 bp)
GAAGTTTCTTCCTGAGTTTTGTTGC
LOC_Os02g19330
Os.27045.1.S1_a_at--958--10552Chr02:11293112..11293136 (25 bp)
TTCTTCCTGAGTTTTGTTGCTCATG
LOC_Os02g19330
Os.27045.1.S1_a_at--198--10412Chr02:11293101..11293125 (25 bp)
TTTTGTTGCTCATGAAACCTGCCTG
LOC_Os02g19330
Os.27045.1.S1_a_at--632--6672Chr02:11293097..11293121 (25 bp)
GTTGCTCATGAAACCTGCCTGGTAT
LOC_Os02g19330
Os.27045.1.S1_a_at--653--2372Chr02:11293087..11293111 (25 bp)
AAACCTGCCTGGTATCTATCTCTGG
LOC_Os02g19330
Os.27045.1.S1_a_at--660--4272Chr02:11293080..11293104 (25 bp)
CCTGGTATCTATCTCTGGCTGTAGA
LOC_Os02g19330
Os.27045.1.S1_a_at--997--3692Chr02:11293072..11293096 (25 bp)
CTATCTCTGGCTGTAGAAGGTGCTT
LOC_Os02g19330
Os.27045.1.S1_a_at--443--3872Chr02:11293037..11293061 (25 bp)
CTGTTTGATTGTTCTTCAAGACAAG
LOC_Os02g19330
Target Sequence 
GAGAGGGTTGGAGCATCGATAAACAGCGGTAATATAAGGCACCGAGTTTACTATCGTNGCGACATGTCTGGTTTATTATG
TACTGTAGGGATGCAGTCTGTTTTGCATGCATTATGCAGATGGATGTGTTTTTGTTACTGGGAAGTTTCTTCCTGAGTTT
TGTTGCTCATGAAACCTGCCTGGTATCTATCTCTGGCTGTAGAAGGTGCTTCTTGAAGATGCTGTTTGATTGTTCTTCAA
GACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27045.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis