Browse Element(s) Details


OsAffx.2683.1.S1_at

Description tigr:9630.m01843
TID=OsAffx.2683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1932011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19280OsAffx.2681.1.S1_at11/112+11265363..11271755expressed protein
LOC_Os02g19290OsAffx.12117.1.S1_at11/112+11273052..11273980hypothetical protein
LOC_Os02g19300OsAffx.8279.1.S1_at2/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300Os.52731.1.S1_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300OsAffx.22699.1.S1_x_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19310Os.27066.1.A1_x_at3/112+11284509..11287664hypothetical protein
LOC_Os02g19320OsAffx.2683.1.S1_at11/112+11289886..11290579hypothetical protein
LOC_Os02g19330Os.27045.1.S1_a_at11/112+11292717..11300266expressed protein
LOC_Os02g19340NANA2+11301327..11301638hypothetical protein
LOC_Os02g19350NANA2+11305198..11308941hypothetical protein
LOC_Os02g19360NANA2+11309095..11310567hypothetical protein
LOC_Os02g19370NANA2+11312071..11313481hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2683.1.S1_at--322--5511Chr02:11289951..11289975 (25 bp)
GAAAATCCTTGACCCCAATGCCTCA
LOC_Os02g19320
OsAffx.2683.1.S1_at--74--9471Chr02:11289973..11289997 (25 bp)
TCAACTAGTTTTGCCGCACCTTCAA
LOC_Os02g19320
OsAffx.2683.1.S1_at--24--2351Chr02:11290267..11290290 (24 bp)
AAAGCAAAGGTCTAGCCGCGGTCGC
LOC_Os02g19320
OsAffx.2683.1.S1_at--230--7231Chr02:11290286..11290310 (25 bp)
GTCGCCCGAGGAGGCTTTCTTGGCA
LOC_Os02g19320
OsAffx.2683.1.S1_at--747--6651Chr02:11290376..11290400 (25 bp)
GTTGATGTTTTACTTACCACGGAGA
LOC_Os02g19320
OsAffx.2683.1.S1_at--593--8991Chr02:11290423..11290447 (25 bp)
TGCTCCTTTGGCTCTGGGAAATTTG
LOC_Os02g19320
OsAffx.2683.1.S1_at--136--2831Chr02:11290453..11290477 (25 bp)
AAGTGTCCTTTTGACTCCTATTGCA
LOC_Os02g19320
OsAffx.2683.1.S1_at--137--10271Chr02:11290462..11290486 (25 bp)
TTTGACTCCTATTGCACCACTAGAG
LOC_Os02g19320
OsAffx.2683.1.S1_at--86--3331Chr02:11290479..11290503 (25 bp)
CACTAGAGCCAACGCCTGAGGATAT
LOC_Os02g19320
OsAffx.2683.1.S1_at--138--6171Chr02:11290496..11290520 (25 bp)
GAGGATATTGCGGTCACTGCTGCGA
LOC_Os02g19320
OsAffx.2683.1.S1_at--673--9691Chr02:11290509..11290533 (25 bp)
TCACTGCTGCGAGGGCAATGGCTGA
LOC_Os02g19320
Target Sequence 
GAAAATCCTTGACCCCAATGCCTCAACTAGTTTTGCCGCACCTTCAAAAAGCAAAGGTCTAGCCGCGGTCGCCCGAGGAG
GCTTTCTTGGCAGAAGAAGTCTGCCAATTAATAAATCATCAATCGCTAAGACAAATTCCATAAGAGAACCTAGTAGTGTT
GATGTTTTACTTACCACGGAGACACTAACCCTCCTGAGCATCCCTGCTCCTTTGGCTCTGGGAAATTTGGTCCAAAGTGT
CCTTTTGACTCCTATTGCACCACTAGAGCCAACGCCTGAGGATATTGCGGTCACTGCTGCGAGGGCAATGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis