Browse Element(s) Details


OsAffx.2681.1.S1_at

Description tigr:9630.m01839
TID=OsAffx.2681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19260NANA2+11254040..11254810retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19270NANA2+11255033..11259454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19280OsAffx.2681.1.S1_at11/112+11265363..11271755expressed protein
LOC_Os02g19290OsAffx.12117.1.S1_at11/112+11273052..11273980hypothetical protein
LOC_Os02g19300OsAffx.8279.1.S1_at2/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300Os.52731.1.S1_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300OsAffx.22699.1.S1_x_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19310Os.27066.1.A1_x_at3/112+11284509..11287664hypothetical protein
LOC_Os02g19320OsAffx.2683.1.S1_at11/112+11289886..11290579hypothetical protein
LOC_Os02g19330Os.27045.1.S1_a_at11/112+11292717..11300266expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2681.1.S1_at--249--3871Chr02:11271139..11271163 (25 bp)
CTGAGTGTGTTAGCAGGCGACGACA
LOC_Os02g19280
OsAffx.2681.1.S1_at--227--8391Chr02:11271154..11271178 (25 bp)
GGCGACGACACAGCTGATACTTCGT
LOC_Os02g19280
OsAffx.2681.1.S1_at--328--331Chr02:11271170..11271194 (25 bp)
ATACTTCGTTCATTATCTTTGGTCG
LOC_Os02g19280
OsAffx.2681.1.S1_at--743--431Chr02:11271184..11271208 (25 bp)
ATCTTTGGTCGTTTGGCACAGCGGC
LOC_Os02g19280
OsAffx.2681.1.S1_at--751--3031Chr02:11271244..11271268 (25 bp)
AATCCAGCTACCACTGATTTCATAC
LOC_Os02g19280
OsAffx.2681.1.S1_at--686--5971Chr02:11271325..11271349 (25 bp)
GAGAACACTGCCTTTACTGGCAATG
LOC_Os02g19280
OsAffx.2681.1.S1_at--574--8511Chr02:11271342..11271366 (25 bp)
TGGCAATGTTGCGTTCCAGGTGAAC
LOC_Os02g19280
OsAffx.2681.1.S1_at--379--2131Chr02:11271365..11271389 (25 bp)
ACAGGATCCTTGGAGGTGCTTCTTC
LOC_Os02g19280
OsAffx.2681.1.S1_at--341--4551Chr02:11271509..11271533 (25 bp)
GCCCATCAACTGCTGTATCGAAAAA
LOC_Os02g19280
OsAffx.2681.1.S1_at--262--7431Chr02:11271554..11271578 (25 bp)
GTGTTTCAAAGACCCATGCAGATGT
LOC_Os02g19280
OsAffx.2681.1.S1_at--1056--691Chr02:11271682..11271703 (22 bp)
ATGAGGGCGCTGATCATGCCAGCCT
LOC_Os02g19280
Target Sequence 
CTGAGTGTGTTAGCAGGCGACGACACAGCTGATACTTCGTTCATTATCTTTGGTCGTTTGGCACAGCGGCTCATTGGTCG
TTCAGTGGAGACGCTGTTGCAGCAGAATCCAGCTACCACTGATTTCATACCAAAGGAGATCACTGATCTACTTGAGAAAG
AATTTTCTTCGAATGTTAGTATCATAGAGAACACTGCCTTTACTGGCAATGTTGCGTTCCAGGTGAACAGGATCCTTGGA
GGTGCTTCTTCCCACGGCCTTCCCTTGCTTCAGTCGCCATCTGCATCTCAAGCATCTTCTCTCCCAGCTTCCATGGCTCT
ATCACCAACTCCATCAGTTGGCCTTAGTGATGCACAGACTGGACCAACCAGCCCATCAACTGCTGTATCGAAAAAGAAGG
AGTTGGACATAGAATGTGTTTCAAAGACCCATGCAGATGTTCAGGATGAAGAGGACGTAGAGGATGAGGGCGCTGATCAT
GCCAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis