Browse Element(s) Details


OsAffx.31133.2.S1_at

Description tigr:9632.m00318
TID=OsAffx.31133.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0410011/11hypothetical protein
LOC_Os09g096701/11hypothetical protein
LOC_Os11g285401/11expressed protein
LOC_Os02g192501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed
LOC_Os04g04070OsAffx.26978.1.S1_at2/114+1865197..1867015hypothetical protein
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein
LOC_Os04g04109NANA4+1882420..1882648NA
LOC_Os04g04120NANA4+1883826..1890866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04130OsAffx.13657.1.S1_at11/114+1892575..1894299hypothetical protein
LOC_Os04g04140OsAffx.10637.3.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04140OsAffx.10637.4.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04140OsAffx.10637.1.S1_s_at11/114+1902894..1903972hypothetical protein
LOC_Os04g04150NANA4+1905562..1912230retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31133.2.S1_at--1093--51Chr04:1881145..1881169 (25 bp)
ATTGCACAAGCAGAAACTGATTAAT
LOC_Os04g04100
OsAffx.31133.2.S1_at--595--10493Chr04:1881338..1881362 (25 bp)
TTAATCATCTACCCGAAGCACTGCA
LOC_Os04g04100
OsAffx.31133.2.S1_at--203--2731Chr04:1881353..1881377 (25 bp)
AAGCACTGCACCGTGACAGTCTTGG
LOC_Os04g04100
OsAffx.31133.2.S1_at--480--5072Chr09:5214162..5214181 (20 bp)
GCACCGTGACAGTCTTGGACCCTCT
LOC_Os09g09670
OsAffx.31133.2.S1_at--934--5811Chr04:1881377..1881401 (25 bp)
GACCCTCTCGATTACTCTCATGACT
LOC_Os04g04100
OsAffx.31133.2.S1_at--207--9491Chr04:1881382..1881406 (25 bp)
TCTCGATTACTCTCATGACTCATAC
LOC_Os04g04100
OsAffx.31133.2.S1_at--835--6551Chr04:1881386..1881410 (25 bp)
GATTACTCTCATGACTCATACAAAC
LOC_Os04g04100
OsAffx.31133.2.S1_at--855--3751Chr04:1881393..1881417 (25 bp)
CTCATGACTCATACAAACAATTTCT
LOC_Os04g04100
OsAffx.31133.2.S1_at--1030--991Chr04:1881771..1881875 (25 bp)
AGGATTTGCCAAGGGAGGAGCAACA
LOC_Os04g04100
OsAffx.31133.2.S1_at--934--6171Chr04:1881865..1881889 (25 bp)
GAGGAGCAACAAACAAGCTTTGACA
LOC_Os04g04100
OsAffx.31133.2.S1_at--500--3371Chr04:1881893..1881917 (25 bp)
CAGCCATTAAAAATATCCAGCGCGA
LOC_Os04g04100
Target Sequence 
ATTGCACAAGCAGAAACTGATTAATGTCGCACAGTACATTGGACGAGCCTTCTTGCACTTTCAAAATAAGAGGGTCGTCC
TGGCCGCTTATAATTTTAACGATCATTACATCGGTTTAATCATCTACCCGAAGCACTGCACCGTGACAGTCTTGGACCCT
CTCGATTACTCTCATGACTCATACAAACAATTTCTAACAATCTTACAATATGCGTACAAGTACTACAAGTTCAAGGGTGG
AGAACAGATTCGATCAAGGGAGAAGCTGCTAGTACATACATATTGGCCGTGTCACAAGCAACCTAGAGGCACTGTCCTCA
GCGGGTATTACGCATGCGAATTCCTAAGGGTTAATGGGAGGTACAGGGTTAACCCAGAGGATTTGCCAAGGGAGGAGCAA
CAAACAAGCTTTGACAATACAGCCATTAAAAATATCCAGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31133.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis