Browse Element(s) Details


OsAffx.13655.1.S1_at

Description tigr:9632.m00314
TID=OsAffx.13655.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to Mx GTP-binding proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0406011/11Dynamin central region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed
LOC_Os04g04070OsAffx.26978.1.S1_at2/114+1865197..1867015hypothetical protein
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein
LOC_Os04g04109NANA4+1882420..1882648NA
LOC_Os04g04120NANA4+1883826..1890866retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13655.1.S1_at--893--8391Chr04:1862447..1862471 (25 bp)
GGCGCGGTACGTGAACGAGCTCATC
LOC_Os04g04060
OsAffx.13655.1.S1_at--27--5431Chr04:1862393..1862417 (25 bp)
GAACCCCGAGTACATCAAGACCTGG
LOC_Os04g04060
OsAffx.13655.1.S1_at--347--971Chr04:1862325..1862349 (25 bp)
AGGACCGCTCCAAGCCAGTGGCGAA
LOC_Os04g04060
OsAffx.13655.1.S1_at--949--5711Chr04:1862037..1862061 (25 bp)
GACTCGCCGCGTACTGGAACAGCGT
LOC_Os04g04060
OsAffx.13655.1.S1_at--613--2671Chr04:1861963..1861987 (25 bp)
AAGCGCCTCGCTGAGAAGGATCTCG
LOC_Os04g04060
OsAffx.13655.1.S1_at--491--9351Chr04:1861929..1861953 (25 bp)
TCGCTGCTCAGGTCATGGGCAATAA
LOC_Os04g04060
OsAffx.13655.1.S1_at--998--8531Chr04:1861893..1861917 (25 bp)
TGGAGCGGATGCTGGTGCCCACACC
LOC_Os04g04060
OsAffx.13655.1.S1_at--772--4211Chr04:1861860..1861884 (25 bp)
CCGCCAAGCGTGACTGTCTCAAGAA
LOC_Os04g04060
OsAffx.13655.1.S1_at--1062--2371Chr04:1861828..1861852 (25 bp)
AAACTGCTCCGGGAATCCAGGGAAG
LOC_Os04g04060
OsAffx.13655.1.S1_at--547--5331Chr04:1861807..1861831 (25 bp)
GAAGTCGTCGCCAATATCATGGACA
LOC_Os04g04060
OsAffx.13655.1.S1_at--282--851Chr04:1861789..1861813 (25 bp)
ATGGACAGATTAACGCGGCAAGCAC
LOC_Os04g04060
Target Sequence 
GGCGCGGTACGTGAACGAGCTCATCGACATGGAGATGGTGGCCAACTACACGGCGAACCCCGAGTACATCAAGACCTGGA
CCAGCATGATGGATGGCCAGAGCAGGCTCCGCGAGGCCCTGGAGGACCGCTCCAAGCCAGTGGCGAAGCTTCGCTCCTTC
TCCAAGCCCACGGCGGTCGCCCTCCCGGGGTTCGGAGAGACCGACGTGTCGCACCTCCACCAGCTGCCGCCGGAGCAGGT
GGAGCTCGCCATGCAGGCCTTCGACCTCAAGGCGCGACTCGCCGCGTACTGGAACAGCGTCGTGCTCCGCGTCATCGACG
GCTTGGCCCTGCACGTCCTCTACAGCATCAAGCGCCTCGCTGAGAAGGATCTCGAGGATGAGCTCGCTGCTCAGGTCATG
GGCAATAACATGGACGGAGTGGAGCGGATGCTGGTGCCCACACCCGCCGCCGCCGCCAAGCGTGACTGTCTCAAGAAAAG
CATCAAACTGCTCCGGGAATCCAGGGAAGTCGTCGCCAATATCATGGACAGATTAACGCGGCAAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis