Browse Element(s) Details


Os.8704.1.S2_at

Description gb:AK120404.1
DB_XREF= gi:37990027
TID=Os.8704.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088L21, full insert sequence.
FL= gb:AK071986.1 gb:AK071693.1 gb:AK120404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0402011/11Protein transport protein Sec24-like At3g07100, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03990OsAffx.13652.1.S1_at10/114+1822597..18266633'-5' exonuclease family protein, expressed
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed
LOC_Os04g04070OsAffx.26978.1.S1_at2/114+1865197..1867015hypothetical protein
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006979biological_processresponse to oxidative stress
GO:0016192biological_processvesicle-mediated transport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8704.1.S2_at--147--4631Chr04:1851776..1851800 (25 bp)
GCGTCGTACGTCAGGGTGAACAGCC
LOC_Os04g04020
Os.8704.1.S2_at--962--911Chr04:1851807..1851831 (25 bp)
AGGCTTTTTGCTTCTATCTAACTTG
LOC_Os04g04020
Os.8704.1.S2_at--1126--2591Chr04:1851894..1851918 (25 bp)
AACGCAGAGCTAGTCACGATGAATC
LOC_Os04g04020
Os.8704.1.S2_at--495--9831Chr04:1851953..1851977 (25 bp)
TAAACTGCTGCAGATTCAGCCGCTG
LOC_Os04g04020
Os.8704.1.S2_at--1143--9191Chr04:1851976..1852000 (25 bp)
TGCCAGTTCCTAATCTCTCGAAACA
LOC_Os04g04020
Os.8704.1.S2_at--366--1311Chr04:1852022..1852046 (25 bp)
AGATGTCCAGAATGTCTTCCCCTTA
LOC_Os04g04020
Os.8704.1.S2_at--676--10231Chr04:1852075..1852099 (25 bp)
TATTGTTAATATTCGTCCCTGTGAT
LOC_Os04g04020
Os.8704.1.S2_at--671--9311Chr04:1852090..1852114 (25 bp)
TCCCTGTGATTATTTTCCTCGTGAG
LOC_Os04g04020
Os.8704.1.S2_at--964--9631Chr04:1852237..1852261 (25 bp)
TCAGATTTCTAGTTTGTGCCGTGTC
LOC_Os04g04020
Os.8704.1.S2_at--1126--8711Chr04:1852258..1852282 (25 bp)
TGTCGGTCTCCTGGTATTTTTAGTT
LOC_Os04g04020
Os.8704.1.S2_at--468--8011Chr04:1852343..1852367 (25 bp)
GGAGGGCTCCCATTTAACTGGTGTT
LOC_Os04g04020
Target Sequence 
GCGTCGTACGTCAGGGTGAACAGCCAAGAGAAGGCTTTTTGCTTCTATCTAACTTGGTCGAGGATCAGATGTCTGGGACT
AGCAGTTACATGGACTGGATACTCCAAATCCACCGCCAAACGCAGAGCTAGTCACGATGAATCAAGGGAATCGCCGTTCC
NAATTTTTGGCTTANTGTAAACTGCTGCAGATTCAGCCGCTGCCAGTTCCTAATCTCTCGAAACAGTTGGAACTAATTCG
CAAGTCAGATGTCCAGAATGTCTTCCCCTTAGCAGCAGCACGCTGGCAAGCAAAAGTTTTATTGTTAATATTCGTCCCTG
TGATTATTTTCCTCGTGAGTGAAAATACAGATGTTGTATGAGAATAATTAGGGCAACAGTGACCATTGGTAAGGTATACA
ACTTGGTGTTCTTGGAAATGTGCTGTACGTTTTTTTTTTTCCATTTTTGTTTTTATTATTGTTCAGATTTCTAGTTTGTG
CCGTGTCGGTCTCCTGGTATTTTTAGTTCTCCAAAGTTTGTCGTGTAAAACTCATTTTTGACTGATGATCTAGCTGCATG
TAATGGGGGGAGGGCTCCCATTTAACTGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8704.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis