Browse Element(s) Details


Os.26873.1.A1_at

Description gb:AK059167.1
DB_XREF= gi:32969185
TID=Os.26873.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E03, full insert sequence.
FL= gb:AK059167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03990OsAffx.13652.1.S1_at10/114+1822597..18266633'-5' exonuclease family protein, expressed
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26873.1.A1_at--716--6371Chr04:1836345..1836369 (25 bp)
GATCCTAATGCACCACCTGGGTAAT
LOC_Os04g04010
Os.26873.1.A1_at--1118--331Chr04:1836322..1836346 (25 bp)
ATAAACCTTCGTTGCTCGTTGTGAA
LOC_Os04g04010
Os.26873.1.A1_at--823--6651Chr04:1836279..1836303 (25 bp)
GTTGATGATTCCTTGCATGATCCTA
LOC_Os04g04010
Os.26873.1.A1_at--143--2091Chr04:1836200..1836224 (25 bp)
ACATATTGTGTTCATCCCTGCAGTA
LOC_Os04g04010
Os.26873.1.A1_at--43--6551Chr04:1836148..1836172 (25 bp)
GATTATCTAGGTGCATTCCATCCGT
LOC_Os04g04010
Os.26873.1.A1_at--154--91Chr04:1836134..1836158 (25 bp)
ATTCCATCCGTGTTGTGTTCACAAA
LOC_Os04g04010
Os.26873.1.A1_at--974--611Chr04:1836070..1836094 (25 bp)
ATGCTTAGGGCTTGACACTTGCTCA
LOC_Os04g04010
Os.26873.1.A1_at--871--9091Chr04:1836037..1836061 (25 bp)
TGCTCTTAAGCTCTGTTGGTGTTGT
LOC_Os04g04010
Os.26873.1.A1_at--822--6331Chr04:1836009..1836033 (25 bp)
GATGCATCATAAGCAGGGCTGCCTC
LOC_Os04g04010
Os.26873.1.A1_at--467--3791Chr04:1835987..1836011 (25 bp)
CTCGTGAGCAGTTTGGCCATTTGTT
LOC_Os04g04010
Os.26873.1.A1_at--589--8811Chr04:1835922..1835946 (25 bp)
TGTTGCTGCTGTTCTACTTTGATAT
LOC_Os04g04010
Target Sequence 
GATCCTAATGCACCACCTGGGTAATAAACCTTCGTTGCTCGTTGTGAAATTCGATCACCATGAATCGTTGATGATTCCTT
GCATGATCCTAAAAAAATGTCAGTGGACTAGTGGAGTTGCAGGTGGTCTGCTGCTTTGAATGGCAACATATTGTGTTCAT
CCCTGCAGTAGAAGACCCGAGGCAAATGGGTTAATTGGATTATCTAGGTGCATTCCATCCGTGTTGTGTTCACAAAGCCT
TCTGTAATATGATGTAGAGAATAGCTGAAATTGGCATGCTTAGGGCTTGACACTTGCTCAANCAAAAATGCTCTTAAGCT
CTGTTGGTGTTGTGGAGATGCATCATAAGCAGGGCTGCCTCGTGAGCAGTTTGGCCATTTGTTNTATAGAGTATCTGCAA
ATACATTGTACCGAATTTGTTCGTGTTGCTGCTGTTCTACTTTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26873.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis