Browse Element(s) Details


OsAffx.13652.1.S1_at

Description tigr:9632.m00306
TID=OsAffx.13652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Werner Syndrome-like exonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0399010/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03980Os.52733.1.S1_at11/114+1801095..1803205flavin-containing monooxygenase YUCCA3, putative, expressed
LOC_Os04g03990OsAffx.13652.1.S1_at10/114+1822597..18266633'-5' exonuclease family protein, expressed
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13652.1.S1_at--259--3791Chr04:1826027..1826425 (25 bp)
CTCCCGCTTTCCGAGGTAATGTGAA
LOC_Os04g03990
OsAffx.13652.1.S1_at--299--1471Chr04:1825971..1825995 (25 bp)
AGCATAGTGTACTGCAGGACCCCTT
LOC_Os04g03990
OsAffx.13652.1.S1_at--101--8451Chr04:1825888..1825912 (25 bp)
TGGCCAGGTTTCTCTTGGATTCGAT
LOC_Os04g03990
OsAffx.13652.1.S1_at--1093--6571Chr04:1825871..1825895 (25 bp)
GATTCGATCTCGAGTGGAGGCCCTT
LOC_Os04g03990
OsAffx.13652.1.S1_at--983--6211Chr04:1825860..1825879 (20 bp)
GAGGCCCTTTCCGAGAAGAGTGCAG
LOC_Os04g03990
OsAffx.13652.1.S1_at--888--5691Chr04:1825384..1825408 (25 bp)
GACTATGATGTCCATGTACAGCCAT
LOC_Os04g03990
OsAffx.13652.1.S1_at--1061--9751Chr04:1825337..1825361 (25 bp)
TAATGCCAAGTTAGGTTTCCCTCCT
LOC_Os04g03990
OsAffx.13652.1.S1_at--145--6251Chr04:1825308..1825332 (25 bp)
GATGGAGTCTTGCTTCATTAACTGA
LOC_Os04g03990
OsAffx.13652.1.S1_at--242--2571Chr04:1824548..1824572 (25 bp)
AACTGGGAGGCATATGTTCTCTCAA
LOC_Os04g03990
OsAffx.13652.1.S1_at--731--6911Chr04:1824510..1824534 (25 bp)
GTATGCTGCTACAGATGCCTACATA
LOC_Os04g03990
OsAffx.13652.1.S1_at--1026--691NONE
ATGAGGTACTGCAGAGTCTCCCAGA
NONE
Target Sequence 
CTCCCGCTTTCCGAGGTAATGTGAAGGCAAGGTACCAACCAGTAATGTTCAATGGCAGCATAGTGTACTGCAGGACCCCT
TCAGAAGTGGAGAAAGCCACAAGGGACATTTTATGCAAAATTGAAACCATGAAGGCCTCTGGCCAGGTTTCTCTTGGATT
CGATCTCGAGTGGAGGCCCTTTCCGAGAAGAGTGCAGGTTGGAATATGTATAGATAATGACGCAAGGAAAATGTTCAATG
ACTATGATGTCCATGTACAGCCATTGATGGATCTGTCAAATCTTGCTAATGCCAAGTTAGGTTTCCCTCCTAAAAGATGG
AGTCTTGCTTCATTAACTGAAATGGTCACATGTAGAGAGTTGCCGAAGCCAAGCAACATAAGAATGGGAAACTGGGAGGC
ATATGTTCTCTCAAAGCAACAACTTCAGTATGCTGCTACAGATGCCTACATATCTTGGCACTTGTATGAGGTACTGCAGA
GTCTCCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis