Browse Element(s) Details


Os.52733.1.S1_at

Description gb:AK068976.1
DB_XREF= gi:32979000
TID=Os.52733.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002N07, full insert sequence.
FL= gb:AK068976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0398011/11flavin-containing monooxygenase YUCCA3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein
LOC_Os04g03940NANA4+1782696..1787834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03950OsAffx.1412.2.S1_at2/114+1789130..1792056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03960OsAffx.3716.1.S1_at11/114+1793644..1793940hypothetical protein
LOC_Os04g03970OsAffx.13651.1.S1_at11/114+1795604..1796287hypothetical protein
LOC_Os04g03980Os.52733.1.S1_at11/114+1801095..1803205flavin-containing monooxygenase YUCCA3, putative, expressed
LOC_Os04g03990OsAffx.13652.1.S1_at10/114+1822597..18266633'-5' exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52733.1.S1_at--1026--4111Chr04:1801671..1801695 (25 bp)
CCATCAATCCCCTTGGTTAAATTCG
LOC_Os04g03980
Os.52733.1.S1_at--1039--7451Chr04:1801583..1801607 (25 bp)
GTGTGATCATACTACGTTGCTAGGT
LOC_Os04g03980
Os.52733.1.S1_at--465--1351Chr04:1801465..1801489 (25 bp)
AGAGACAAGGTGGAGCCCTCTCGTC
LOC_Os04g03980
Os.52733.1.S1_at--889--1651Chr04:1801452..1801476 (25 bp)
AGCCCTCTCGTCAGTGGGAAGTGAG
LOC_Os04g03980
Os.52733.1.S1_at--699--171Chr04:1801416..1801440 (25 bp)
ATTTTTACTGCAGCTAGAGGCGTCT
LOC_Os04g03980
Os.52733.1.S1_at--109--6311Chr04:1801355..1801379 (25 bp)
GATGAGGCTCTTGTCATTGACCTAT
LOC_Os04g03980
Os.52733.1.S1_at--257--7131Chr04:1801343..1801367 (25 bp)
GTCATTGACCTATTGTTTCTTTTGT
LOC_Os04g03980
Os.52733.1.S1_at--283--6751Chr04:1801224..1801248 (25 bp)
GTAGTAAGCACCTCTTAGTTTAGTT
LOC_Os04g03980
Os.52733.1.S1_at--380--10051Chr04:1801209..1801233 (25 bp)
TAGTTTAGTTGTTACTGCCTCTCCA
LOC_Os04g03980
Os.52733.1.S1_at--94--8751Chr04:1801171..1801195 (25 bp)
TGTAATCTTTGCAATCACCTTTTGT
LOC_Os04g03980
Os.52733.1.S1_at--605--9671Chr04:1801157..1801181 (25 bp)
TCACCTTTTGTAACTCCCTTTGTAT
LOC_Os04g03980
Target Sequence 
CCATCAATCCCCTTGGTTAAATTCGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAG
CTAGGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAGTGGGAGAGTATAAAAAA
AAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAAAAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAG
TGAGAGCCCTAGGGGATTTTTACTGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATG
AGGCTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAATATCCCCTACTAGTAGTA
TGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGTAGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGC
CTCTCCAGTGACAGTTCTTTTGTAATCTTTGCAATCACCTTTTGTAACTCCCTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis