Browse Element(s) Details


OsAffx.3716.1.S1_at

Description tigr:9632.m00303
TID=OsAffx.3716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0396011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein
LOC_Os04g03940NANA4+1782696..1787834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03950OsAffx.1412.2.S1_at2/114+1789130..1792056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03960OsAffx.3716.1.S1_at11/114+1793644..1793940hypothetical protein
LOC_Os04g03970OsAffx.13651.1.S1_at11/114+1795604..1796287hypothetical protein
LOC_Os04g03980Os.52733.1.S1_at11/114+1801095..1803205flavin-containing monooxygenase YUCCA3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3716.1.S1_at--973--5811Chr04:1793874..1793898 (25 bp)
GACCCTGGCAGCCTTAGCGATGGCT
LOC_Os04g03960
OsAffx.3716.1.S1_at--879--9991Chr04:1793860..1793884 (25 bp)
TAGCGATGGCTGGTCGTGCTACCTT
LOC_Os04g03960
OsAffx.3716.1.S1_at--2--4511Chr04:1793805..1793829 (25 bp)
GCCGAGCTTGTTCTCACTGGTGTTC
LOC_Os04g03960
OsAffx.3716.1.S1_at--976--10791Chr04:1793798..1793822 (25 bp)
TTGTTCTCACTGGTGTTCTTGCAGA
LOC_Os04g03960
OsAffx.3716.1.S1_at--329--9691Chr04:1793792..1793816 (25 bp)
TCACTGGTGTTCTTGCAGAGCGCCA
LOC_Os04g03960
OsAffx.3716.1.S1_at--1066--1951Chr04:1793790..1793814 (25 bp)
ACTGGTGTTCTTGCAGAGCGCCAGG
LOC_Os04g03960
OsAffx.3716.1.S1_at--580--1391Chr04:1793749..1793773 (25 bp)
AGACGTAGTCCCTTTGCCTGGGGAT
LOC_Os04g03960
OsAffx.3716.1.S1_at--551--11Chr04:1793726..1793750 (25 bp)
ATAGGCGAACGGTGGTCTTCGTCGC
LOC_Os04g03960
OsAffx.3716.1.S1_at--145--7131Chr04:1793712..1793736 (25 bp)
GTCTTCGTCGCGTTTTTTGCCGCGG
LOC_Os04g03960
OsAffx.3716.1.S1_at--1027--10631Chr04:1793684..1793708 (25 bp)
TTCGCCTTCCTTGCGATGATTTCCT
LOC_Os04g03960
OsAffx.3716.1.S1_at--740--10691Chr04:1793674..1793698 (25 bp)
TTGCGATGATTTCCTGCCCTCCGTG
LOC_Os04g03960
Target Sequence 
GACCCTGGCAGCCTTAGCGATGGCTGGTCGTGCTACCTTGGCAAATCTCTTGTCAAGGAGGCCGACTTAGCCGAGCTTGT
TCTCACTGGTGTTCTTGCAGAGCGCCAGGGGTCCTGTCCGGGCGAAGACGTAGTCCCTTTGCCTGGGGATAGGCGAACGG
TGGTCTTCGTCGCGTTTTTTGCCGCGGGGCTTCGCCTTCCTTGCGATGATTTCCTGCCCTCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis