Browse Element(s) Details


OsAffx.3714.1.S1_at

Description tigr:9632.m00298
TID=OsAffx.3714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0391011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03870OsAffx.13649.1.S1_at11/114+1754143..1755585Cytochrome P450 family protein, expressed
LOC_Os04g03880OsAffx.13650.1.S1_at11/114+1757251..1761044hypothetical protein
LOC_Os04g03884Os.49504.1.S1_at11/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03884Os.51175.1.S1_x_at6/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03890OsAffx.25857.1.S1_at11/114+1767030..1768484Cytochrome P450 family protein
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein
LOC_Os04g03940NANA4+1782696..1787834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03950OsAffx.1412.2.S1_at2/114+1789130..1792056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03960OsAffx.3716.1.S1_at11/114+1793644..1793940hypothetical protein
LOC_Os04g03970OsAffx.13651.1.S1_at11/114+1795604..1796287hypothetical protein
LOC_Os04g03980Os.52733.1.S1_at11/114+1801095..1803205flavin-containing monooxygenase YUCCA3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3714.1.S1_at--7--4131Chr04:1777093..1777117 (25 bp)
CGCAGCGGAGGCTAACCGGCCAGAC
LOC_Os04g03910
OsAffx.3714.1.S1_at--356--3731Chr04:1777082..1777106 (25 bp)
CTAACCGGCCAGACGGCTGTTGGTG
LOC_Os04g03910
OsAffx.3714.1.S1_at--831--7451Chr04:1775921..1775945 (25 bp)
GTGTCCATGTCGAAGCCGCAGGTCC
LOC_Os04g03910
OsAffx.3714.1.S1_at--1135--711Chr04:1775915..1775939 (25 bp)
ATGTCGAAGCCGCAGGTCCAATTGT
LOC_Os04g03910
OsAffx.3714.1.S1_at--876--1031Chr04:1775902..1775926 (25 bp)
AGGTCCAATTGTCTTCTTGCTACTG
LOC_Os04g03910
OsAffx.3714.1.S1_at--446--3172Chr11:17083066..17083088 (23 bp)
AATTGTCTTCTTGCTACTGCTGCGG
NONE
OsAffx.3714.1.S1_at--508--9131Chr04:1775876..1775900 (25 bp)
TGCGGCTGCACCGACACTGACAGGA
LOC_Os04g03910
OsAffx.3714.1.S1_at--936--9031Chr04:1775870..1775894 (25 bp)
TGCACCGACACTGACAGGAGGATAT
LOC_Os04g03910
OsAffx.3714.1.S1_at--121--4671Chr04:1775841..1775865 (25 bp)
GCGGATGGTAGCGTACGTTGCAACA
LOC_Os04g03910
OsAffx.3714.1.S1_at--305--9851Chr04:1775833..1775857 (25 bp)
TAGCGTACGTTGCAACACACACCTT
LOC_Os04g03910
OsAffx.3714.1.S1_at--764--10731Chr04:1775743..1775767 (25 bp)
TTGAGAGGCAACCACGGCAAATCCG
LOC_Os04g03910
Target Sequence 
CGCAGCGGAGGCTAACCGGCCAGACGGCTGTTGGTGACGGCGGCGAAGGTCGTGCCCGCCGTGGTGCTCGTGGCAGTTGG
CGGCGGCGTCGGCTGGCAACGGGGGCGTCGAGCTGGCTGCTTGGTGGCAGAGGACGACGGCGCAGCGGTTTGCGGAGGCG
GAGGCTGGCATCGGTGGCAACGGTGACGGCAGCCGTGGCTGTGGACGGTGGTGACGTCGGCGGATGCGGGTTGCTAGCGA
GGTGGCTGGGTGTTCGGCAGCAGCGGCTGCGGTGGCGCTCGGTGTCCATGTCGAAGCCGCAGGTCCAATTGTCTTCTTGC
TACTGCTGCGGCTGCACCGACACTGACAGGAGGATATGGGAGCGGATGGTAGCGTACGTTGCAACACACACCTTCTGCCT
CGCGATGCAGCTGCCACTGCCGATGCACGGCTTTCTCGGCCCGACCGTGGGGGAGATGGTTGAGAGGCAACCACGGCAAA
TCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis