Browse Element(s) Details


OsAffx.13650.1.S1_at

Description tigr:9632.m00296
TID=OsAffx.13650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0388011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03860Os.47910.1.S1_at11/114+1741578..1746940expressed protein
LOC_Os04g03870OsAffx.13649.1.S1_at11/114+1754143..1755585Cytochrome P450 family protein, expressed
LOC_Os04g03880OsAffx.13650.1.S1_at11/114+1757251..1761044hypothetical protein
LOC_Os04g03884Os.49504.1.S1_at11/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03884Os.51175.1.S1_x_at6/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03890OsAffx.25857.1.S1_at11/114+1767030..1768484Cytochrome P450 family protein
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein
LOC_Os04g03940NANA4+1782696..1787834retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13650.1.S1_at--149--9811Chr04:1760620..1760644 (25 bp)
TAACCGCTGTGGAAGGGATGGCAAC
LOC_Os04g03880
OsAffx.13650.1.S1_at--87--4351Chr04:1759644..1759668 (25 bp)
CCACGGGTGACCCACGAGTGAAGAT
LOC_Os04g03880
OsAffx.13650.1.S1_at--930--7751Chr04:1759639..1759663 (25 bp)
GGTGACCCACGAGTGAAGATCCCAC
LOC_Os04g03880
OsAffx.13650.1.S1_at--976--4411Chr04:1758823..1758847 (25 bp)
GCCAGAGACCTTCCCTCACGAGGAT
LOC_Os04g03880
OsAffx.13650.1.S1_at--492--4291Chr04:1758810..1758834 (25 bp)
CCTCACGAGGATCCGGCGCCAGTGA
LOC_Os04g03880
OsAffx.13650.1.S1_at--250--8571Chr04:1758724..1758748 (25 bp)
TGGATCCGGCGCTCCGATGGCAGGG
LOC_Os04g03880
OsAffx.13650.1.S1_at--420--7571Chr04:1758700..1758724 (25 bp)
GGGCGCGGATCTAGCCAACGACGGC
LOC_Os04g03880
OsAffx.13650.1.S1_at--312--2291Chr04:1757341..1757365 (25 bp)
AAAGTCATCGAAGAATTATTCTCTA
LOC_Os04g03880
OsAffx.13650.1.S1_at--423--1951Chr04:1757305..1757329 (25 bp)
ACTCATAAGAGATGAAATTCCTCGA
LOC_Os04g03880
OsAffx.13650.1.S1_at--56--3171Chr04:1757290..1757314 (25 bp)
AATTCCTCGAGGATTCAGGGCAGCA
LOC_Os04g03880
OsAffx.13650.1.S1_at--502--3791Chr04:1757285..1757309 (25 bp)
CTCGAGGATTCAGGGCAGCAGGAAA
LOC_Os04g03880
Target Sequence 
TAACCGCTGTGGAAGGGATGGCAACGGGGTGGGGCGGGGCGGGTTGAACAGGAACGGCCCCGCCCCCGCTTCCTTCCGGG
TTCACCCGATCCCATCTCCGGCCCCAGAGGGCCCCACGGGTGACCCACGAGTGAAGATCCCACCCTGGCCCCGCCCTCGC
CTAAATTCGGGGCCCCGCTCCCGAGAGCTAGCGGCGGTGGGCGACAGCCGGGAGCGGGCGGTGGCTGGTGATGGCGCCTT
GGGCGGCATCGCCCGCGTGGATCCGGTGCCAGAGACCTTCCCTCACGAGGATCCGGCGCCAGTGACGACGGCAGGCGGTG
GGTGCGGCGGATCCGGCTTGGCGACGACGGTGGACGGTGGGGGTGGTGGATCCGGCGCTCCGATGGCAGGGGGCGCGGAT
CTAGCCAACGACGGCGGCAGCCTACGATTTGGGGAACTTGGAATAAAGTCATCGAAGAATTATTCTCTATATGCAAGAAT
ACTCATAAGAGATGAAATTCCTCGAGGATTCAGGGCAGCAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis