Browse Element(s) Details


Os.47910.1.S1_at

Description gb:AK105313.1
DB_XREF= gi:32990522
TID=Os.47910.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D07, full insert sequence.
FL= gb:AK105313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0386011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03840Os.12100.1.S1_at1/114+1721070..1721566retrotransposon protein, putative, unclassified
LOC_Os04g03850OsAffx.13648.1.S1_at11/114+1723719..1728137subtilase family protein, putative
LOC_Os04g03860Os.47910.1.S1_at11/114+1741578..1746940expressed protein
LOC_Os04g03870OsAffx.13649.1.S1_at11/114+1754143..1755585Cytochrome P450 family protein, expressed
LOC_Os04g03880OsAffx.13650.1.S1_at11/114+1757251..1761044hypothetical protein
LOC_Os04g03884Os.49504.1.S1_at11/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03884Os.51175.1.S1_x_at6/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03890OsAffx.25857.1.S1_at11/114+1767030..1768484Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47910.1.S1_at--870--9051Chr04:1746670..1746694 (25 bp)
TGCATGGGCCCATGATGAGCCTGTA
LOC_Os04g03860
Os.47910.1.S1_at--773--4331Chr04:1746679..1746703 (25 bp)
CCATGATGAGCCTGTAGCACTTGCT
LOC_Os04g03860
Os.47910.1.S1_at--1034--1491Chr04:1746694..1746718 (25 bp)
AGCACTTGCTCCATCTCTACCATGT
LOC_Os04g03860
Os.47910.1.S1_at--463--1731Chr04:1746712..1746736 (25 bp)
ACCATGTTCGTTGTAGACTTTGTTG
LOC_Os04g03860
Os.47910.1.S1_at--952--3671Chr04:1746729..1746753 (25 bp)
CTTTGTTGTAGTGTGTATGGTCAGA
LOC_Os04g03860
Os.47910.1.S1_at--326--6071Chr04:1746767..1746791 (25 bp)
GATGTATACCGGTTATTTACTCCCG
LOC_Os04g03860
Os.47910.1.S1_at--3--10351Chr04:1746782..1746806 (25 bp)
TTTACTCCCGGAAATTCCATTATAG
LOC_Os04g03860
Os.47910.1.S1_at--391--3171Chr04:1746814..1746838 (25 bp)
AATTGCATATGTATACAGCGGGAAC
LOC_Os04g03860
Os.47910.1.S1_at--430--3391Chr04:1746829..1746853 (25 bp)
CAGCGGGAACAAATGAGGCAGAATC
LOC_Os04g03860
Os.47910.1.S1_at--1058--6191Chr04:1746843..1746867 (25 bp)
GAGGCAGAATCACCAATACATGTTT
LOC_Os04g03860
Os.47910.1.S1_at--896--3171Chr04:1746874..1746898 (25 bp)
CAATTAGGTGTCTTGTAGGAATATC
LOC_Os04g03860
Target Sequence 
TGCATGGGCCCATGATGAGCCTGTAGCACTTGCTCCATCTCTACCATGTTCGTTGTAGACTTTGTTGTAGTGTGTATGGT
CAGATTTAAGTTATATCGATGTATACCGGTTATTTACTCCCGGAAATTCCATTATAGAAGACAAAATTGCATATGTATAC
AGCGGGAACAAATGAGGCAGAATCACCAATACATGTTTGTATTTCAATTAGGTGTCTTGTAGGAATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis