Browse Element(s) Details


OsAffx.13648.1.S1_at

Description tigr:9632.m00293
TID=OsAffx.13648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0385011/11subtilase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03810Os.51225.1.S1_at11/114+1701788..1707406Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03820OsAffx.25855.1.S1_at10/114+1708170..1708795hypothetical protein
LOC_Os04g03830Os.54228.1.S1_at11/114+1710306..1714386Calcium binding EGF domain containing protein, expressed
LOC_Os04g03840Os.12100.1.S1_at1/114+1721070..1721566retrotransposon protein, putative, unclassified
LOC_Os04g03850OsAffx.13648.1.S1_at11/114+1723719..1728137subtilase family protein, putative
LOC_Os04g03860Os.47910.1.S1_at11/114+1741578..1746940expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13648.1.S1_at--1155--2831Chr04:1727606..1727630 (25 bp)
AAGTAATGATCGATTTGGCTTACCA
LOC_Os04g03850
OsAffx.13648.1.S1_at--718--3111Chr04:1727630..1727654 (25 bp)
AATATTGGCTGATGGGTTACCTCAA
LOC_Os04g03850
OsAffx.13648.1.S1_at--297--791Chr04:1727641..1727665 (25 bp)
ATGGGTTACCTCAAAAGCCAGTAGA
LOC_Os04g03850
OsAffx.13648.1.S1_at--486--2431Chr04:1727653..1727677 (25 bp)
AAAAGCCAGTAGATCCATTTGACTA
LOC_Os04g03850
OsAffx.13648.1.S1_at--716--5691Chr04:1727745..1727769 (25 bp)
GACTATATCCCATTCCATGATTGTT
LOC_Os04g03850
OsAffx.13648.1.S1_at--1074--9491Chr04:1727919..1727943 (25 bp)
TCTCCTCCGGGCATGCAGATATTAG
LOC_Os04g03850
OsAffx.13648.1.S1_at--211--3591Chr04:1727954..1727978 (25 bp)
CATTCTAAAATTCAGCGCTGGCATG
LOC_Os04g03850
OsAffx.13648.1.S1_at--448--4711Chr04:1727970..1727994 (25 bp)
GCTGGCATGAATAAGCAGAGCTTCA
LOC_Os04g03850
OsAffx.13648.1.S1_at--416--9711Chr04:1727992..1728016 (25 bp)
TCAAGGTCACATTCACCACGACACA
LOC_Os04g03850
OsAffx.13648.1.S1_at--243--4371Chr04:1728007..1728031 (25 bp)
CCACGACACACAAGGTTCAAGGTAA
LOC_Os04g03850
OsAffx.13648.1.S1_at--772--7811Chr04:1728027..1728051 (25 bp)
GGTAACTACCTGTTTGGTAGCCTAG
LOC_Os04g03850
Target Sequence 
AAGTAATGATCGATTTGGCTTACCAATATTGGCTGATGGGTTACCTCAAAAGCCAGTAGATCCATTTGACTATGGTGGCG
GCTTCATTGATCTAAACAGAGCTGTTGATCCTGGCCTAGCATATGATGTTGATCCAAAAGACTATATCCCATTCCATGAT
TGTTTTTTAGCTGGCAACTCAAGCTGTGAATCAGAATCCAGAAATCTGAACATTCCATCAATTGCGATCCTAAATCTAAA
GGAACCAACAACTGTGCTAAGAACAGTGACAAATGTAGGCCAAGCTGATGCAATTTACAAGGCTGTTGTGCAATCTCCTC
CGGGCATGCAGATATTAGTAGAGCCATCCATTCTAAAATTCAGCGCTGGCATGAATAAGCAGAGCTTCAAGGTCACATTC
ACCACGACACACAAGGTTCAAGGTAACTACCTGTTTGGTAGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis