Browse Element(s) Details


Os.54228.1.S1_at

Description gb:AK102639.1
DB_XREF= gi:32987848
TID=Os.54228.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099P12, full insert sequence.
FL= gb:AK102639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0383011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03796Os.49328.1.S1_at11/114+1689101..1690041Subtilisin serine protease, putative, expressed
LOC_Os04g03802Os.7278.2.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_x_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03810Os.51225.1.S1_at11/114+1701788..1707406Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03820OsAffx.25855.1.S1_at10/114+1708170..1708795hypothetical protein
LOC_Os04g03830Os.54228.1.S1_at11/114+1710306..1714386Calcium binding EGF domain containing protein, expressed
LOC_Os04g03840Os.12100.1.S1_at1/114+1721070..1721566retrotransposon protein, putative, unclassified
LOC_Os04g03850OsAffx.13648.1.S1_at11/114+1723719..1728137subtilase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54228.1.S1_at--152--1031Chr04:1713876..1713900 (25 bp)
AGGTCATTGCTTTCTTCAAACACTA
LOC_Os04g03830
Os.54228.1.S1_at--1019--10071Chr04:1713923..1713947 (25 bp)
TAGTGGATCCCCAAATTGCTAAGGA
LOC_Os04g03830
Os.54228.1.S1_at--638--6071Chr04:1714039..1714063 (25 bp)
GAGTTAAGGCTGCAGCTCCTAAGAG
LOC_Os04g03830
Os.54228.1.S1_at--495--7552Chr04:1714114..1714138 (25 bp)
GGGCCATCAGTACAATCCAATTCCA
LOC_Os04g03830
Os.54228.1.S1_at--204--9231Chr04:1714135..1714159 (25 bp)
TCCAGCACTACATCTGTGACCAGGA
LOC_Os04g03830
Os.54228.1.S1_at--503--5851Chr04:1714152..1714176 (25 bp)
GACCAGGAGTGTTGTGCTTCGTGCA
LOC_Os04g03830
Os.54228.1.S1_at--777--9011Chr04:1714203..1714227 (25 bp)
TGCAACTCGTTGCTATACCATGGAG
LOC_Os04g03830
Os.54228.1.S1_at--386--5911Chr04:1714231..1714255 (25 bp)
GAGCTCGTTTCTTGGACAGATCTAC
LOC_Os04g03830
Os.54228.1.S1_at--35--1291Chr04:1714248..1714272 (25 bp)
AGATCTACCGCGCTAAACTGTACTA
LOC_Os04g03830
Os.54228.1.S1_at--427--5671Chr04:1714288..1714312 (25 bp)
GACATCACAAACTATTCTCTGCCGT
LOC_Os04g03830
Os.54228.1.S1_at--884--8111Chr04:1714321..1714345 (25 bp)
GGACTGTTTCCTTTTAGCGTGTGAA
LOC_Os04g03830
Target Sequence 
AGGTCATTGCTTTCTTCAAACACTACAACATGGAACAATCATGGAAATAGTGGATCCCCAAATTGCTAAGGAAGCAAATG
AAAGTGAAATAAACGAAATGGCATCGCTTGCAGAAATATGTTTACGAATCAGAGGAGAAGAAAGGCCTAAAATGAAAGAG
GTGGAGTTAAGGCTGCAGCTCCTAAGAGCTATGATAACTGAGAGAAGCCGTCAGGAGTTACTAAGGAACAATGGAATTGG
GCCATCAGTACAATCCAATTCCAGCACTACATCTGTGACCAGGAGTGTTGTGCTTCGTGCAGGTATTGGCATATCCACTG
ATCAGGATGCAACTCGTTGCTATACCATGGAGCAAGAGCTCGTTTCTTGGACAGATCTACCGCGCTAAACTGTACTACTC
TATCTTTTATGAGACATCACAAACTATTCTCTGCCGTCTTTTTCTGGACTGTTTCCTTTTAGCGTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis