Browse Element(s) Details


Os.7278.1.S1_at

Description gb:AK100128.1
DB_XREF= gi:32985337
TID=Os.7278.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009E20, full insert sequence.
FL= gb:AK100128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0380211/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03769Os.53120.1.A1_at2/114+1667493..1667853NA
LOC_Os04g03769OsAffx.13192.1.S1_x_at2/114+1667493..1667853NA
LOC_Os04g03780NANA4+1675821..1676621retrotransposon protein, putative, unclassified
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified
LOC_Os04g03796Os.49328.1.S1_at11/114+1689101..1690041Subtilisin serine protease, putative, expressed
LOC_Os04g03802Os.7278.2.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_x_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03810Os.51225.1.S1_at11/114+1701788..1707406Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03820OsAffx.25855.1.S1_at10/114+1708170..1708795hypothetical protein
LOC_Os04g03830Os.54228.1.S1_at11/114+1710306..1714386Calcium binding EGF domain containing protein, expressed
LOC_Os04g03840Os.12100.1.S1_at1/114+1721070..1721566retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7278.1.S1_at--437--991Chr04:1697033..1697057 (25 bp)
AGGATTCCAATTGCGGTTCGACCAA
LOC_Os04g03802
Os.7278.1.S1_at--1160--7911Chr04:1697034..1697058 (25 bp)
GGATTCCAATTGCGGTTCGACCAAT
LOC_Os04g03802
Os.7278.1.S1_at--579--3691Chr04:1697246..1697270 (25 bp)
CTATATGATACCTCCTATCATATGG
LOC_Os04g03802
Os.7278.1.S1_at--393--251Chr04:1697248..1697272 (25 bp)
ATATGATACCTCCTATCATATGGAC
LOC_Os04g03802
Os.7278.1.S1_at--59--10131Chr04:1697249..1697273 (25 bp)
TATGATACCTCCTATCATATGGACA
LOC_Os04g03802
Os.7278.1.S1_at--1000--711Chr04:1697250..1697274 (25 bp)
ATGATACCTCCTATCATATGGACAG
LOC_Os04g03802
Os.7278.1.S1_at--933--8831Chr04:1697251..1697275 (25 bp)
TGATACCTCCTATCATATGGACAGA
LOC_Os04g03802
Os.7278.1.S1_at--294--6491Chr04:1697252..1697276 (25 bp)
GATACCTCCTATCATATGGACAGAG
LOC_Os04g03802
Os.7278.1.S1_at--453--311Chr04:1697253..1697277 (25 bp)
ATACCTCCTATCATATGGACAGAGG
LOC_Os04g03802
Os.7278.1.S1_at--558--9971Chr04:1697254..1697278 (25 bp)
TACCTCCTATCATATGGACAGAGGT
LOC_Os04g03802
Os.7278.1.S1_at--860--3811Chr04:1697257..1697281 (25 bp)
CTCCTATCATATGGACAGAGGTCCG
LOC_Os04g03802
Target Sequence 
AGGATTCCAATTGCGGTTCGACCAATAGTATCCGATAATTATGCAGATCTCTGAAGAAGCATAGAACTACAGAATGTTCA
TACTTCAAAAGGTTCTGTGGAGCAGGCCTCATCCTATATTATCCCCTCAAAGTTGAGTTTGTCAGCCTCACCAAAACTGT
TGTACTACTTTACATGTTTTGTTTTTCTGTCTGTAATTTGTGATTTCACTACACTATATGATACCTCCTATCATATGGAC
AGAGGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis