Browse Element(s) Details


Os.53120.1.A1_at

Description gb:AK070922.1
DB_XREF= gi:32980945
TID=Os.53120.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074K09, full insert sequence.
FL= gb:AK070922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g037692/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03750OsAffx.25854.1.S1_at11/114+1646743..1662148hypothetical protein
LOC_Os04g03750Os.55335.1.S1_x_at8/114+1646743..1662148hypothetical protein
LOC_Os04g03750OsAffx.27864.4.S1_x_at1/114+1646743..1662148hypothetical protein
LOC_Os04g03760OsAffx.3713.1.S1_at11/114+1663698..1663934hypothetical protein
LOC_Os04g03769Os.53120.1.A1_at2/114+1667493..1667853NA
LOC_Os04g03769OsAffx.13192.1.S1_x_at2/114+1667493..1667853NA
LOC_Os04g03780NANA4+1675821..1676621retrotransposon protein, putative, unclassified
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified
LOC_Os04g03796Os.49328.1.S1_at11/114+1689101..1690041Subtilisin serine protease, putative, expressed
LOC_Os04g03802Os.7278.2.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_x_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_at11/114+1692519..1697608PA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53120.1.A1_at--247--6711Chr03:19859172..19859196 (25 bp)
GTTCCCAGAGATCGGCTCCAAGAAA
NONE
Os.53120.1.A1_at--153--8911Chr03:19859142..19859166 (25 bp)
TGAGATCAGACAGAGCAGAGGCTAC
NONE
Os.53120.1.A1_at--1078--9451Chr03:19858987..19859011 (25 bp)
TCTGGTTTCTTGGATTTAGGGTGGA
NONE
Os.53120.1.A1_at--708--3751Chr03:19858872..19858896 (25 bp)
CTCTCTATGTTCAAGGTGGGTCCCA
NONE
Os.53120.1.A1_at--177--2611Chr03:19858860..19858884 (25 bp)
AAGGTGGGTCCCACGCGATTAAATG
NONE
Os.53120.1.A1_at--568--3211Chr03:19858827..19858851 (25 bp)
CAAGTGTGGGCAAGCCAAAGGCACT
NONE
Os.53120.1.A1_at--523--2313Chr04:1667625..1667649 (25 bp)
AAAGGCACTGCCATGTGGGTCCAGG
LOC_Os04g03769
Os.53120.1.A1_at--574--7272Chr04:1667643..1667667 (25 bp)
GTCCAGGTCGTGGTAGACTAGGTAA
LOC_Os04g03769
Os.53120.1.A1_at--395--1792Chr04:6285383..6285403 (21 bp)
ACCGATGTTTTATTCAGTTTACAGG
NONE
Os.53120.1.A1_at--556--9472Chr04:6285341..6285361 (21 bp)
TCTGTCTCTTTCTTTGAAGTTCAAA
NONE
Os.53120.1.A1_at--577--9751Chr03:19858633..19858657 (25 bp)
TAATAACCTATGCTACCCAGATTCC
NONE
Target Sequence 
GTTCCCAGAGATCGGCTCCAAGAAACGAGGTGAGATCAGACAGAGCAGAGGCTACGGCATGCAAGGGTGAATCGGGAACG
GAAGAAAGATGGCAACGACGATGACCCGTTGGGCGGCGGAGATGGCATCATCCCGGCGGCCGGCAAGAAGATGATGGCGA
GGAGAGCAAGAAGGAGCTCTCCCACTCTGGTTTCTTGGATTTAGGGTGGACTACAGAGTGAGGAGGGATGGGTGGGGAAG
CTAGAGAGCAAGGGGGTGAAGAAGGAGAAGCTGCCACGATGTTGGAACGTGTCGGTATTTCTCTCTATGTTCAAGGTGGG
TCCCACGCGATTAAATGGTGGAACACAAGTGTGGGCAAGCCAAAGGCACTGCCATGTGGGTCCAGGTCGTGGTAGACTAG
GTAAGGGTGAGGAGGATGGTTAGGAACAAAGTAAACCGATGTTTTATTCAGTTTACAGGATTTTAGATTTTTCTGTCTCT
TTCTTTGAAGTTCAAATTGAAAGTTAGAATGATGCTAAAAATTTTGATGATTTTTTTGGTAATAACCTATGCTACCCAGA
TTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53120.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis