Browse Element(s) Details


Os.55335.1.S1_x_at

Description gb:AK107895.1
DB_XREF= gi:32993104
TID=Os.55335.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F02, full insert sequence.
FL= gb:AK107895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g037508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03700Os.46306.1.S1_x_at1/114+1620743..1623610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710Os.45976.1.S1_x_at4/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710Os.45902.1.A1_x_at4/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710OsAffx.14557.1.S1_at3/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710OsAffx.22442.1.S1_x_at1/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03720NANA4+1635732..1637601retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g03730NANA4+1638437..1639453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g03740OsAffx.14557.1.S1_at2/114+1639493..1640766expressed protein
LOC_Os04g03750OsAffx.25854.1.S1_at11/114+1646743..1662148hypothetical protein
LOC_Os04g03750Os.55335.1.S1_x_at8/114+1646743..1662148hypothetical protein
LOC_Os04g03750OsAffx.27864.4.S1_x_at1/114+1646743..1662148hypothetical protein
LOC_Os04g03760OsAffx.3713.1.S1_at11/114+1663698..1663934hypothetical protein
LOC_Os04g03769Os.53120.1.A1_at2/114+1667493..1667853NA
LOC_Os04g03769OsAffx.13192.1.S1_x_at2/114+1667493..1667853NA
LOC_Os04g03780NANA4+1675821..1676621retrotransposon protein, putative, unclassified
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55335.1.S1_x_at--104--91Chr04:1646672..1646696 (25 bp)
ATTCGCCGCAGCCAGTTTGCATCCA
NONE
Os.55335.1.S1_x_at--534--6851Chr04:1646686..1646710 (25 bp)
GTTTGCATCCATCGTCTACCCGATA
NONE
Os.55335.1.S1_x_at--311--531Chr04:1646737..1646761 (25 bp)
ATCGCCATGCCGCTTGGGATTTATG
NONE
Os.55335.1.S1_x_at--221--9851Chr04:1646795..1646819 (25 bp)
TACAATTACTCTGTCTACGCGTTGG
LOC_Os04g03750
Os.55335.1.S1_x_at--178--3731Chr04:1646809..1646833 (25 bp)
CTACGCGTTGGCATGTGGTTCATTT
LOC_Os04g03750
Os.55335.1.S1_x_at--983--8571Chr04:1646824..1646848 (25 bp)
TGGTTCATTTGTGGGATTCGGTTTC
LOC_Os04g03750
Os.55335.1.S1_x_at--90--111Chr04:1646839..1646863 (25 bp)
ATTCGGTTTCAGCTGTTTTTGCAAC
LOC_Os04g03750
Os.55335.1.S1_x_at--759--2231Chr04:1646862..1646886 (25 bp)
ACAATTCAGTGCTAGATCAATCGGG
LOC_Os04g03750
Os.55335.1.S1_x_at--830--7651Chr04:1646885..1646909 (25 bp)
GGGATGTTTTCCTCTTCATTAGTTC
LOC_Os04g03750
Os.55335.1.S1_x_at--441--3591Chr04:1646901..1646925 (25 bp)
CATTAGTTCGTATCGGGTGCAAGTT
LOC_Os04g03750
Os.55335.1.S1_x_at--1008--9671Chr04:1646933..1646957 (25 bp)
TCACGTTTTCCTTGGATTCTGGTGT
LOC_Os04g03750
Target Sequence 
ATTCGCCGCAGCCAGTTTGCATCCATCGTCTACCCGATACACCGGCGCTCTCCGGTCCCATCACCATCGCCATGCCGCTT
GGGATTTATGTGGTTATTCTTCTGATGAAATGTCTGTTGTCTATACAATTACTCTGTCTACGCGTTGGCATGTGGTTCAT
TTGTGGGATTCGGTTTCAGCTGTTTTTGCAACAATTCAGTGCTAGATCAATCGGGGATGTTTTCCTCTTCATTAGTTCGT
ATCGGGTGCAAGTTTGGGGGGTCACGTTTTCCTTGGATTCTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55335.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis