Browse Element(s) Details


OsAffx.25854.1.S1_at

Description tigr:9632.m00282
TID=OsAffx.25854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0375011/11hypothetical protein
LOC_Os08g180806/11hypothetical protein
LOC_Os08g348505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03700Os.46306.1.S1_x_at1/114+1620743..1623610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710Os.45976.1.S1_x_at4/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710Os.45902.1.A1_x_at4/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710OsAffx.14557.1.S1_at3/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03710OsAffx.22442.1.S1_x_at1/114+1625933..1635118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03720NANA4+1635732..1637601retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g03730NANA4+1638437..1639453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g03740OsAffx.14557.1.S1_at2/114+1639493..1640766expressed protein
LOC_Os04g03750OsAffx.25854.1.S1_at11/114+1646743..1662148hypothetical protein
LOC_Os04g03750Os.55335.1.S1_x_at8/114+1646743..1662148hypothetical protein
LOC_Os04g03750OsAffx.27864.4.S1_x_at1/114+1646743..1662148hypothetical protein
LOC_Os04g03760OsAffx.3713.1.S1_at11/114+1663698..1663934hypothetical protein
LOC_Os04g03769Os.53120.1.A1_at2/114+1667493..1667853NA
LOC_Os04g03769OsAffx.13192.1.S1_x_at2/114+1667493..1667853NA
LOC_Os04g03780NANA4+1675821..1676621retrotransposon protein, putative, unclassified
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25854.1.S1_at--473--5391Chr04:1660387..1660411 (25 bp)
GAAGCATTTTCAAGCTCCGCTACTC
LOC_Os04g03750
OsAffx.25854.1.S1_at--794--4791Chr04:1660400..1660424 (25 bp)
GCTCCGCTACTCAAATTCATATTAA
LOC_Os04g03750
OsAffx.25854.1.S1_at--631--131Chr04:1660420..1660444 (25 bp)
ATTAACCTCGATATACCACAGGTGG
LOC_Os04g03750
OsAffx.25854.1.S1_at--609--7733Chr04:1660440..1660460 (21 bp)
GGTGGAACAATTTCGCTCCAGCTAT
LOC_Os04g03750
OsAffx.25854.1.S1_at--415--2393Chr04:1660573..1660597 (25 bp)
AAACTAGGATCTCCAAGCCTTCAAC
LOC_Os04g03750
OsAffx.25854.1.S1_at--148--1253Chr04:1660610..1660634 (25 bp)
AGATTGTACGTTTATCCCCACTTCA
LOC_Os04g03750
OsAffx.25854.1.S1_at--91--5591Chr04:1660663..1660687 (25 bp)
GAAATATCCGCTATGCCTGTTTCAG
LOC_Os04g03750
OsAffx.25854.1.S1_at--710--10274Chr06:26000392..26000543 (25 bp)
TTTCAGCTTTTCAGGGAGGAGTTAC
NONE
OsAffx.25854.1.S1_at--69--1132Chr04:1660807..1660831 (25 bp)
AGTGCAGTTGCAAAAGTGTCTTCAA
LOC_Os04g03750
OsAffx.25854.1.S1_at--389--9833Chr04:1661033..1661057 (25 bp)
TAAACTCCCCGTGACAATCACAGAT
LOC_Os04g03750
OsAffx.25854.1.S1_at--46--2831Chr04:1661238..1661262 (25 bp)
AAGTTCCCTATTAGCTATGTGTTCA
LOC_Os04g03750
Target Sequence 
GAAGCATTTTCAAGCTCCGCTACTCAAATTCATATTAACCTCGATATACCACAGGTGGAACAATTTCGCTCCAGCTATAA
ACTAGGATCTCCAAGCCTTCAACAACAGCATCCTAAGATTGTACGTTTATCCCCACTTCAAGCAGCAGGAAAAATTTACA
ACTTAGAAGAAATATCCGCTATGCCTGTTTCAGCTTTTCAGGGAGGAGTTACTTATAGTGCAGTTGCAAAAGTGTCTTCA
ATACTGTCATCAATTAAGTGGTACTACATAGGATGTCATCGTTGTGACAAAGGGTATAAACTCCCCGTGACAATCACAGA
TAAATCAGGGAGTTTAGATGCAGTGGCATTTTCTTTTGTTGCTGAAGATTTAGTTGAGCTTGATGCAGCCCAAGCTTCTC
AGAACATGAAGATAGACTCAGTTGATCATCTAGTAACTCTTAATAAAGCCATTGCAAAAACAAGACTTTTTACTATAGGA
ATGAATACTGATTCATCTTCTAAGTTCCCTATTAGCTATGTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis