Browse Element(s) Details


OsAffx.27864.4.S1_x_at

Description tigr:9634.m02835
TID=OsAffx.27864.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2955011/11AT hook motif-containing protein, putative
LOC_Os05g0426011/11AT hook motif-containing protein, putative
LOC_Os05g143809/11hypothetical protein
LOC_Os08g180801/11hypothetical protein
LOC_Os08g348501/11hypothetical protein
LOC_Os04g037501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29490Os.53201.1.S1_at11/116+16909988..16915627expressed protein
LOC_Os06g29490Os.53201.2.S1_x_at10/116+16909988..16915627expressed protein
LOC_Os06g29490OsAffx.32219.1.A1_x_at1/116+16909988..16915627expressed protein
LOC_Os06g29520OsAffx.15664.1.S1_at11/116+16919166..16921490retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29530NANA6+16922779..16924710retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29540OsAffx.27864.1.S1_x_at3/116+16926222..16927809hypothetical protein
LOC_Os06g29540OsAffx.27864.5.S1_x_at2/116+16926222..16927809hypothetical protein
LOC_Os06g29550OsAffx.27864.4.S1_x_at11/116+16929565..16931704AT hook motif-containing protein, putative
LOC_Os06g29560NANA6+16932185..16935299hypothetical protein
LOC_Os06g29570NANA6+16937529..16940275hypothetical protein
LOC_Os06g29580OsAffx.27865.1.S1_x_at6/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580OsAffx.9725.1.S1_at5/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580Os.53832.1.S1_at4/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580Os.53011.1.S1_at2/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580Os.53011.1.S1_x_at2/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580OsAffx.22633.1.S1_at2/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27864.4.S1_x_at--902--3772Chr06:16931137..16931161 (25 bp)
CTCTGCATCTATTTCCGCACAAGAT
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--324--5433Chr06:16931216..16931240 (25 bp)
GAACCTTTTGTTGATGTCCCAGAGC
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--734--7233Chr06:16931231..16931255 (25 bp)
GTCCCAGAGCAACTAACGAACATGT
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--714--8793Chr06:16931253..16931277 (25 bp)
TGTTCATAGAGATGCCTCAGTCCCT
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--360--9313Chr06:16931273..16931297 (25 bp)
TCCCTTCTTCTATCACCAAACTGTA
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--336--6254Chr06:16931306..16931330 (25 bp)
GATGGATTGATTTCTTTTGTCTACA
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--956--1213Chr06:16931486..16931510 (25 bp)
AGTTCTACTAACTGTACTGCTATAG
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--1059--6196Chr06:16931510..16931534 (25 bp)
GAGGCACTATATCCAACAGAGTTTC
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--833--3012Chr06:16931599..16931623 (25 bp)
AATGCTTTTGCGTAATCTAGATCCA
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--548--953Chr06:16931629..16931653 (25 bp)
AGGACTCTGCAATGGGACTAGGCTC
LOC_Os06g29550
OsAffx.27864.4.S1_x_at--330--8133Chr06:16931643..16931667 (25 bp)
GGACTAGGCTCATTGTCACACAACT
LOC_Os06g29550
Target Sequence 
CTCTGCATCTATTTCCGCACAAGATAGAGAAGAGTTAAGAAATTTTTCTAATTGGCTTTTGAAAATAGGAAATGGCACAG
AACCTTTTGTTGATGTCCCAGAGCAACTAACGAACATGTTCATAGAGATGCCTCAGTCCCTTCTTCTATCACCAAACTGT
AGGAATCTAGATGGATTGATTTCTTTTGTCTACAACTTAGGATGTCAACCATCAAATCTTATATCATATCTGTGTGAGCG
TGCAATTTTAGCACCTACAAATGAGGTGGTTTCAGAAATAAACAATAGAATGATTGCTCAGTTAGAAGCAAGTGAGATGT
CATATTATAGCTCAGATACAATTGATGACAGTTCTACTAACTGTACTGCTATAGAGGCACTATATCCAACAGAGTTTCTA
AACACAATTTCTATAAATGGACTTCCAGAACATGTGCTGCACTTGAAAATTGGTGTTCCTATAATGCTTTTGCGTAATCT
AGATCCATCAAGAGGACTCTGCAATGGGACTAGGCTCATTGTCACACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27864.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis