Browse Element(s) Details


Os.53201.2.S1_x_at

Description gb:AK105159.1
DB_XREF= gi:32990368
TID=Os.53201.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B01, full insert sequence.
FL= gb:AK105159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2949010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29470Os.27789.1.A1_at2/116+16895518..16896664Peroxidase 1 precursor, putative, expressed
LOC_Os06g29480OsAffx.26961.1.S1_x_at1/116+16901951..16902985Transposable element protein, putative, Retrotrans_gag
LOC_Os06g29490Os.53201.1.S1_at11/116+16909988..16915627expressed protein
LOC_Os06g29490Os.53201.2.S1_x_at10/116+16909988..16915627expressed protein
LOC_Os06g29490OsAffx.32219.1.A1_x_at1/116+16909988..16915627expressed protein
LOC_Os06g29520OsAffx.15664.1.S1_at11/116+16919166..16921490retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29530NANA6+16922779..16924710retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29540OsAffx.27864.1.S1_x_at3/116+16926222..16927809hypothetical protein
LOC_Os06g29540OsAffx.27864.5.S1_x_at2/116+16926222..16927809hypothetical protein
LOC_Os06g29550OsAffx.27864.4.S1_x_at11/116+16929565..16931704AT hook motif-containing protein, putative
LOC_Os06g29560NANA6+16932185..16935299hypothetical protein
LOC_Os06g29570NANA6+16937529..16940275hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53201.2.S1_x_at--750--3591Chr06:16912294..16912318 (25 bp)
CATTGATACCCTTAAGTGCTGCTAA
LOC_Os06g29490
Os.53201.2.S1_x_at--450--9111Chr06:16912310..16912334 (25 bp)
TGCTGCTAAGCCACTTCCAGGGAAG
LOC_Os06g29490
Os.53201.2.S1_x_at--590--8011NONE
GGAGGATCTGACTGGCTGCATGCAC
NONE
Os.53201.2.S1_x_at--131--991Chr06:16915362..16915386 (25 bp)
AGGATCGCCATGCTTCCGAATAAAT
LOC_Os06g29490
Os.53201.2.S1_x_at--271--2551Chr06:16915388..16915412 (25 bp)
AACTGCACCAGTGTGGAAGCCGCAT
LOC_Os06g29490
Os.53201.2.S1_x_at--1148--5411Chr06:16915403..16915427 (25 bp)
GAAGCCGCATCCTATGTATTGTTAA
LOC_Os06g29490
Os.53201.2.S1_x_at--325--1391Chr06:16915429..16915453 (25 bp)
AGACCTGGAGCTTCGATAGGACACA
LOC_Os06g29490
Os.53201.2.S1_x_at--181--5091Chr06:16915463..16915487 (25 bp)
GCACCAGGAGTGGATCGGTTCACAT
LOC_Os06g29490
Os.53201.2.S1_x_at--649--7891Chr06:16915479..16915503 (25 bp)
GGTTCACATCAATCGAGTTCTTTGT
LOC_Os06g29490
Os.53201.2.S1_x_at--723--8691Chr06:16915582..16915606 (25 bp)
TGTGCTTGCAGATACCTTCAGGATA
LOC_Os06g29490
Os.53201.2.S1_x_at--692--6491Chr06:16915603..16915627 (25 bp)
GATAGTTGAATTTCACCTCGTCGTC
LOC_Os06g29490
Target Sequence 
CATTGATACCCTTAAGTGCTGCTAAGCCACTTCCAGGGAAGTTTCTTGATTGGAAAGTAGATTACTCAAAAGATGATGAG
TACTATTTTCCTGAATCAAAATCTTTATGGGTTGAGGCTGAGAAGGGGAGCTTGGAAAAGACCTATGCAAAACTCAAGTA
CACTAATCCTCATTTGACATGCTTGTTTACGGATGCAGGGGAACAAGGAGAAACATCTGCAAGACATGCCACCTGATGGT
GAATGCATGGAAGAAGGAGGATCTGACTGGCTGCATGCACCATACTGGGGTTGGGAGGCAACAGGATCGCCATGCTTCCG
AATAAATCAACTGCACCAGTGTGGAAGCCGCATCCTATGTATTGTTAAGAGACCTGGAGCTTCGATAGGACACAAAACTC
ATTGCACCAGGAGTGGATCGGTTCACATCAATCGAGTTCTTTGTTGACGATGGTGGCAGCTACACGATGTGCCCTCCATG
GGACACCGTCTGTGGCCTCCCCAGCCATCGCCGCGGTCACGCTGTGCTTGCAGATACCTTCAGGATAGTTGAATTTCACC
TCGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53201.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis