Browse Element(s) Details


OsAffx.27864.1.S1_x_at

Description tigr:9633.m00351
TID=OsAffx.27864.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0425011/11hypothetical protein
LOC_Os05g143808/11hypothetical protein
LOC_Os06g295403/11hypothetical protein
LOC_Os09g065202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04220Os.52630.1.S1_at11/115+1902299..1905266Nitrogen regulatory protein P-II, putative, expressed
LOC_Os05g04229OsAffx.10126.1.S1_x_at1/115+1906981..1907332NA
LOC_Os05g04240OsAffx.4247.1.S1_at11/115+1910002..1911806GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g04250OsAffx.27864.1.S1_x_at11/115+1914122..1915844hypothetical protein
LOC_Os05g04250OsAffx.27864.5.S1_x_at5/115+1914122..1915844hypothetical protein
LOC_Os05g04260OsAffx.27864.4.S1_x_at11/115+1917381..1920071AT hook motif-containing protein, putative
LOC_Os05g04270NANA5+1921542..1921805hypothetical protein
LOC_Os05g04280Os.10731.1.A1_a_at11/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.38764.1.S1_x_at8/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.47130.4.A1_x_at3/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04290Os.28943.1.S1_x_at4/115+1925157..1928383retrotransposon protein, putative, unclassified
LOC_Os05g04300NANA5+1929004..1932476retrotransposon protein, putative, unclassified
LOC_Os05g04310NANA5+1935381..1935698hypothetical protein
LOC_Os05g04320NANA5+1936783..1938945retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27864.1.S1_x_at--221--4913Chr06:16926591..16926615 (25 bp)
GCTTCTCTCGGATATGGAATCGGAA
LOC_Os06g29540
OsAffx.27864.1.S1_x_at--998--3773Chr06:16926585..16926609 (25 bp)
CTCGGATATGGAATCGGAACGGCGC
LOC_Os06g29540
OsAffx.27864.1.S1_x_at--642--652Chr06:16926442..16926466 (25 bp)
ATGCAGCGTGGATGCGGTGCGGCGT
LOC_Os06g29540
OsAffx.27864.1.S1_x_at--422--8412Chr06:16926210..16926234 (25 bp)
GGCCGGCGTGTAGCGATGCGGGAGA
NONE
OsAffx.27864.1.S1_x_at--146--5313Chr06:16926160..16926184 (25 bp)
GAAGGAAGCGCTCGATGCTTATCCA
NONE
OsAffx.27864.1.S1_x_at--1045--933Chr06:16926158..16926182 (25 bp)
AGGAAGCGCTCGATGCTTATCCAAC
NONE
OsAffx.27864.1.S1_x_at--207--2673Chr06:16926155..16926179 (25 bp)
AAGCGCTCGATGCTTATCCAACGGT
NONE
OsAffx.27864.1.S1_x_at--618--4133Chr06:16926152..16926176 (25 bp)
CGCTCGATGCTTATCCAACGGTGGG
NONE
OsAffx.27864.1.S1_x_at--393--89312Chr12:17499410..17499434 (25 bp)
TGACGTGGAAGCACCAGGAAGCAGA
NONE
OsAffx.27864.1.S1_x_at--341--53912Chr12:17499417..17499439 (23 bp)
GAAGCACCAGGAAGCAGAGAATTGT
NONE
OsAffx.27864.1.S1_x_at--527--50516Chr12:17499420..17499448 (25 bp)
GCACCAGGAAGCAGAGAATTGTAGT
NONE
Target Sequence 
GCTTCTCTCGGATATGGAATCGGAACGGCGCGGGANAAGGANAGGCAACCGTCGTTGGGGNCGGTGTGGGTCGCANAAGC
GAGGGCTGGGTGGCGCTGAGGGGGNAAGGGGGGAGGCGAAGAGTGGCGCAAGAGGAGGAGGNGAAGNGGGATGCAGCGTG
GATGCGGTGCGGCGTGGATNCGGTGGGGGGGNNNNNGGGGCGGCNGCGCGAGATGCGGGAGAGGGGAGGAGCGATGCAGG
AGANGGGAGTCGATGCGCGTGGGCCGGNGGAGCAGCGCGATGNGGGAGAGGAGAGGAGGGGAGCGATGCGNGAGAGGAGG
TGGGGCNGGCGAGTAGCGATGCGGGAGANGNGAGGAGNGGAGCGATGCGGGAGAGGAGGTGGGGCCGGCGTGTAGCGATG
CGGGAGAGGGGAGGAGAGGAGCGATGCGGAAAGAAGGAAGCGCTCGATGCTTATCCAACGGTGGGGATAAAAAGGGTGAC
GTGGAAGCACCAGGAAGCAGAGAATTGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27864.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis