Browse Element(s) Details


OsAffx.27864.5.S1_x_at

Description tigr:9633.m01257
TID=OsAffx.27864.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g143809/11hypothetical protein
LOC_Os05g042505/11hypothetical protein
LOC_Os06g295402/11hypothetical protein
LOC_Os09g065201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14350NANA5+8052137..8055474retrotransposon protein, putative, unclassified
LOC_Os05g14360OsAffx.14688.1.S1_at11/115+8059716..8061382expressed protein
LOC_Os05g14370OsAffx.14689.1.S1_at11/115+8066205..8067888WRKY DNA binding domain containing protein, expressed
LOC_Os05g14380OsAffx.27864.5.S1_x_at9/115+8077150..8083010hypothetical protein
LOC_Os05g14380OsAffx.27864.4.S1_x_at9/115+8077150..8083010hypothetical protein
LOC_Os05g14380OsAffx.27864.1.S1_x_at8/115+8077150..8083010hypothetical protein
LOC_Os05g14390NANA5+8083913..8085998expressed protein
LOC_Os05g14400Os.45902.1.A1_x_at2/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14400OsAffx.10222.1.S1_x_at2/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14400Os.56372.1.S1_at1/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14400Os.54691.1.S1_x_at1/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14410OsAffx.23366.2.S1_s_at1/115+8103021..8106499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14410OsAffx.23366.1.S1_at1/115+8103021..8106499transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27864.5.S1_x_at--458--2231NONE
AAATTGATAATTGGGCGGCGGTCGT
NONE
OsAffx.27864.5.S1_x_at--715--31NONE
ATTGGGCGGCGGTCGTTTCGCTTCT
NONE
OsAffx.27864.5.S1_x_at--374--9353Chr06:16926593..16926615 (23 bp)
TCGCTTCTCTCGGATATGGAATCGG
LOC_Os06g29540
OsAffx.27864.5.S1_x_at--999--3773Chr06:16926585..16926609 (25 bp)
CTCGGATATGGAATCGGAACGGCGC
LOC_Os06g29540
OsAffx.27864.5.S1_x_at--912--3791Chr05:8077823..8077847 (25 bp)
CTCGCGTGCGACGTGGCAAGGCATA
LOC_Os05g14380
OsAffx.27864.5.S1_x_at--860--7291Chr05:8077699..8077723 (25 bp)
GTGCGGCGGCGTGAGATGCGAGAGA
LOC_Os05g14380
OsAffx.27864.5.S1_x_at--147--5313Chr06:16926160..16926184 (25 bp)
GAAGGAAGCGCTCGATGCTTATCCA
NONE
OsAffx.27864.5.S1_x_at--619--4133Chr06:16926152..16926176 (25 bp)
CGCTCGATGCTTATCCAACGGTGGG
NONE
OsAffx.27864.5.S1_x_at--342--53912Chr12:17499417..17499439 (23 bp)
GAAGCACCAGGAAGCAGAGAATTGT
NONE
OsAffx.27864.5.S1_x_at--434--7651Chr05:8077184..8077464 (25 bp)
GGGATGATTTGTACAGACCTTGTTC
LOC_Os05g14380
OsAffx.27864.5.S1_x_at--549--8831Chr05:8077180..8077460 (25 bp)
TGATTTGTACAGACCTTGTTCTTTT
LOC_Os05g14380
Target Sequence 
AAATTGATAATTGGGCGGCGGTCGTTTCGCTTCTCTCGGATATGGAATCGGAACGGCGCGGGAGAAGGAGAGGCAACTGT
CGTTGGGGCGGTGTGGGTCGCAGAAGCGAGGGCTGGGTGGCGCTGAGGGGGGAAGGGGGGAAGCGGACCTCGCGTGCGAC
GTGGCAAGGCATAGAAGGGGAGGTGAAGCGGAACCGTGGTGTAGAGTGGCGCAAGAGGAGGAGGCGAAGCGGGATGTGGC
GTGGATGCGGTGCGGCGGGGATGCGGGGGGGGGTGCGGCGGCGTGAGATGCGAGAGAGGGGAGGAGCGATGCAAGAGAGG
GGAGTCGATGCGTGTGGGCCGGCGGAGCAGCGCGATGCGGGAGAGGAGAGGAGGGGAGCGATGCGGGAGAGGAGGTGGGG
CCGGCGAGTAGCGATGCGGGAGAGGGGAGGAGAGGAGCGATGCGGATGGAAGGAAGCGCTCGATGCTTATCCAACGGTGG
GGATAAAAAGGGTGACATGGAAGCACCAGGAAGCAGAGAATTGTAGTAGTGGGGATGATTTGTACAGACCTTGTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27864.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis