Browse Element(s) Details


OsAffx.14689.1.S1_at

Description tigr:9633.m01256
TID=OsAffx.14689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1437011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14330Os.18412.1.S1_a_at1/115+8038722..8043362retrotransposon protein, putative, unclassified
LOC_Os05g14340NANA5+8045375..8051530retrotransposon protein, putative, unclassified
LOC_Os05g14350NANA5+8052137..8055474retrotransposon protein, putative, unclassified
LOC_Os05g14360OsAffx.14688.1.S1_at11/115+8059716..8061382expressed protein
LOC_Os05g14370OsAffx.14689.1.S1_at11/115+8066205..8067888WRKY DNA binding domain containing protein, expressed
LOC_Os05g14380OsAffx.27864.5.S1_x_at9/115+8077150..8083010hypothetical protein
LOC_Os05g14380OsAffx.27864.4.S1_x_at9/115+8077150..8083010hypothetical protein
LOC_Os05g14380OsAffx.27864.1.S1_x_at8/115+8077150..8083010hypothetical protein
LOC_Os05g14390NANA5+8083913..8085998expressed protein
LOC_Os05g14400Os.45902.1.A1_x_at2/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14400OsAffx.10222.1.S1_x_at2/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14400Os.56372.1.S1_at1/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed
LOC_Os05g14400Os.54691.1.S1_x_at1/115+8090412..8096942retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14689.1.S1_at--378--2091Chr05:8067196..8067220 (25 bp)
ACATCACAAATCACAGCTGTTCCAC
LOC_Os05g14370
OsAffx.14689.1.S1_at--105--4751Chr05:8067211..8067235 (25 bp)
GCTGTTCCACATTATGACGGTCATC
LOC_Os05g14370
OsAffx.14689.1.S1_at--164--7351Chr05:8067514..8067538 (25 bp)
GTGCAACAACTGGACAGTGCCGGCG
LOC_Os05g14370
OsAffx.14689.1.S1_at--914--1131Chr05:8067529..8067553 (25 bp)
AGTGCCGGCGAAACCATCATGTACA
LOC_Os05g14370
OsAffx.14689.1.S1_at--613--411Chr05:8067544..8067568 (25 bp)
ATCATGTACACCGTGGTCTACTACG
LOC_Os05g14370
OsAffx.14689.1.S1_at--1035--9911Chr05:8067565..8067589 (25 bp)
TACGGACAACACACCTGCAAGACTA
LOC_Os05g14370
OsAffx.14689.1.S1_at--94--2511Chr05:8067589..8067613 (25 bp)
AACATGAGCAATGCTCCTCTCCATG
LOC_Os05g14370
OsAffx.14689.1.S1_at--199--2111Chr05:8067649..8067673 (25 bp)
ACATGCTGCTCTGATGATCTTGGCG
LOC_Os05g14370
OsAffx.14689.1.S1_at--532--2091Chr05:8067695..8067719 (25 bp)
ACATGCACACACCAGAGTTGGCAGA
LOC_Os05g14370
OsAffx.14689.1.S1_at--97--6311Chr05:8067730..8067754 (25 bp)
GATGAGCTTGGTTCTTACCATGCAA
LOC_Os05g14370
OsAffx.14689.1.S1_at--530--5491Chr05:8067793..8067817 (25 bp)
GAACACATGCACAAGCTGCTCGACA
LOC_Os05g14370
Target Sequence 
ACATCACAAATCACAGCTGTTCCACATTATGACGGTCATCAATGGAGAAAATACGGACAGAAGAATATTAACAACTCAAA
CCACCAAAGGAGCTACTACAGATGCAGCTACAAGCATGAACAAAACTGCAAAGCAACCAAGACAGTGCAACAACTGGACA
GTGCCGGCGAAACCATCATGTACACCGTGGTCTACTACGGACAACACACCTGCAAGACTAACATGAGCAATGCTCCTCTC
CATGTTGTTGAAACAAGTACCACTCAAAGCATCTCAACAACATGCTGCTCTGATGATCTTGGCGATTATAGCCAAAAGAT
GGAGAACATGCACACACCAGAGTTGGCAGAAGTGTGCTCTGATGAGCTTGGTTCTTACCATGCAATAATAGGGGCAGAGC
ACAGTGCACTAGGGTTGGAGGATGAACACATGCACAAGCTGCTCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis